Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54810 115 / 2e-28 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT1G08010 109 / 3e-26 GATA GATA11 GATA transcription factor 11 (.1.2) AT5G66320 109 / 3e-26 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G24050 108 / 3e-26 GATA GATA1 GATA transcription factor 1 (.1) AT4G36240 103 / 4e-25 GATA GATA7 GATA transcription factor 7 (.1) AT3G60530 102 / 1e-24 GATA GATA4 GATA transcription factor 4 (.1) AT1G08000 103 / 2e-24 GATA GATA10 GATA transcription factor 10 (.1.2) AT4G32890 103 / 3e-24 GATA GATA9 GATA transcription factor 9 (.1) AT2G45050 102 / 4e-24 GATA GATA2 GATA transcription factor 2 (.1) AT3G51080 101 / 2e-23 GATA GATA6 GATA transcription factor 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009227 [exp] 126 / 1e-31 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10037994 [exp] 126 / 2e-31 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10011430 [exp] 108 / 7e-26 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10016092 [exp] 106 / 8e-26 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10037572 [exp] 107 / 9e-26 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10021466 [exp] 105 / 3e-25 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2) Lus10023684 [exp] 102 / 4e-25 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10037398 [exp] 105 / 5e-25 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10011762 [exp] 103 / 8e-25 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223300 [exp] 130 / 1e-33 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.008G038900 [exp] 129 / 6e-33 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.004G211800 [exp] 111 / 3e-27 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.013G059600 [exp] 108 / 3e-26 AT5G25830 128 / 1e-34 GATA transcription factor 12 (.1) Potri.019G033000 [exp] 107 / 8e-26 AT4G32890 127 / 2e-34 GATA transcription factor 9 (.1) Potri.002G142800 [exp] 103 / 7e-25 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.001G188500 [exp] 104 / 8e-25 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.014G058600 [exp] 103 / 9e-25 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.003G174800 [exp] 100 / 1e-23 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.009G123400 [exp] 101 / 2e-23 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10040404 pacid=23174224 polypeptide=Lus10040404 locus=Lus10040404.g ID=Lus10040404.BGIv1.0 annot-version=v1.0 ATGAGCTCGTCTGGTCAGCCGAGCGTACGACGAGGACTACTCCGTTTCTACAAGATCGTCACTACCGACTCCCTCCGTGACAGGAAGCTCATGCTTCCGA AGGTGGTCAGGAAAAGATTAATACTAATGCAGGGTAACAATGGCGGATCAGATTTCTTGTCGAACCGCACAGCAACGATATTCGTCGTCAATGAACGAGG GCTGAGCTGGGAAATGGAGCTGTGGAATGATGAAGAACAGGGCCGCCTCTGGCTGAGAAATGGATTCCATGAGTTTGCTGTCTTCTACTCTTTAGCTGAC TGCCATCTTCTTCGCTTCAAGCATCTGAGTGATTTTACGTTTTCCGTTCAGATTCATGACCGTTCTGCTTCGGAGATCGACTATCCCTCCTCTCTTCCTG CTGATGATAGAGGTCAAGAACCTCAGCCCGACGATGACGACGATGACAGTGATGACGACAATGACAGCGACTTTGAAATCTCTACCGGCGTTCCTCCTCC TTCCTTCCTCTCGCCATTTCCTCAAAGAACGATGGTTGGCAACACTCAGACACCGTCGAAACTTAGCTGCGTGGACGAGCTAGACTGCGGAAGCTTCTTC GGCCAAATCGACGACCTAATCGACATCCCCTCCGACGACATCGACGCTGTCGCCGACGAAACCAAGAACTACGGTGGCTCCGATGACCTCTCTGATGCAC TGTACGTTCCGGACGATGACATTGGTCAGCTGGACATGCTAACCAGTGCTGTTGAGGATTCAGGATTCCTCACCGTGAACGACAGTGTGAACAAGAACTT GTCTCGTTCAGCGATATGGTTCAGGTTCAGGACATCGAGCCCCATCTCGGTCCTCAACAGTTCAGGGGACCACCAAAAGCCAGCTTCATCTTGCAGAGAG GAAGCCAATGTGCCTCCAAGGAAACGTGGACGTCCTCGCGAGAAATGGTCGAGCCCCATCTCGGTCCTTGACAGTTCAGGGGACCAAAAGCCAACTTCAT CTTGCAGCATGGAAGCCAATGTGGCTCCAAGCAAACGTGAATGCTCGAGCCTCAGCTCAGTCCTGGACAGTTCAGGGGACCAAAAGCCAGCTTCACCTTG CATAGTGGAAGCCAATGTGGCTCTGGGGAGACGTGGACGCCCTCCTTGCAAGAAATTTTGCCCCTGCTGTTATTTCCCCCGCCCTAGGTCAGAAATGCAG CGCACTAACTCGGAGCAGAAGAAGATCAAGAAGAAGAAGAAGAGGATGGAAGTGATGAATGCAGAACCAGGGCAGCAACAACAGCAGGGGGTGAGGAAAT GCGTGCATTGTGAGGCGACCAAGACACCACAATGGAGGGCTGGCCCGATGGGGGCGAACACACTTTGCAATGCTTGTGGGATTATGCAGGTGAAGTTGGG GAGGCTTTTGCCCGAATACCGGCCTGCAAATAGCCCGACCTTTGTTCCATCCCTACACTCCAATGTTCACAAGATGGTCCTCCAGATGAGAACCAATACT AATGCTACTACAAATGATGGTGATCTACAAGTTAAGAATGCACACTCACCGGAGCTACTGATTCCGAATCTCAACAGCAATCTTGCCATGGATAGATGTG TGAGATAA
AA sequence Show only first row Show all	>Lus10040404 pacid=23174224 polypeptide=Lus10040404 locus=Lus10040404.g ID=Lus10040404.BGIv1.0 annot-version=v1.0 MSSSGQPSVRRGLLRFYKIVTTDSLRDRKLMLPKVVRKRLILMQGNNGGSDFLSNRTATIFVVNERGLSWEMELWNDEEQGRLWLRNGFHEFAVFYSLAD CHLLRFKHLSDFTFSVQIHDRSASEIDYPSSLPADDRGQEPQPDDDDDDSDDDNDSDFEISTGVPPPSFLSPFPQRTMVGNTQTPSKLSCVDELDCGSFF GQIDDLIDIPSDDIDAVADETKNYGGSDDLSDALYVPDDDIGQLDMLTSAVEDSGFLTVNDSVNKNLSRSAIWFRFRTSSPISVLNSSGDHQKPASSCRE EANVPPRKRGRPREKWSSPISVLDSSGDQKPTSSCSMEANVAPSKRECSSLSSVLDSSGDQKPASPCIVEANVALGRRGRPPCKKFCPCCYFPRPRSEMQ RTNSEQKKIKKKKKRMEVMNAEPGQQQQQGVRKCVHCEATKTPQWRAGPMGANTLCNACGIMQVKLGRLLPEYRPANSPTFVPSLHSNVHKMVLQMRTNT NATTNDGDLQVKNAHSPELLIPNLNSNLAMDRCVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10040404 [exp]	0	1
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	4.6	0.8842
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	6.5	0.8966
AT2G19490			recA DNA recombination family ...		Lus10017151 [exp]	8.8	0.8302
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	11.8	0.8893
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Lus10031967 [exp]	13.9	0.7918
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	22.3	0.8812
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10036743 [exp]	23.2	0.8616
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	24.5	0.8773
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10002325 [exp]	31.5	0.8473
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10020154 [exp]	34.2	0.8615

Compare expression of checked genes

Lus10040404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.