Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52155 256 / 2e-86 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023521 [exp] 491 / 2e-178 AT3G52155 259 / 5e-87 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000600 [exp] 281 / 2e-95 AT3G52155 251 / 2e-84 Phosphoglycerate mutase family protein (.1) Potri.016G000900 [exp] 273 / 2e-92 AT3G52155 270 / 8e-92 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10040405 pacid=23174151 polypeptide=Lus10040405 locus=Lus10040405.g ID=Lus10040405.BGIv1.0 annot-version=v1.0 ATGATGATACTGAGAAGCACTCACTGCTTCTGCTCTTCTCCATCATTCTTCCTCCATCATAATCACACTAACAACAGCAATGCTTCTCCAAACCCAATTC TCTCATTCTCTTCAGTCACCCCAAACTCACCTCATCGCCGCCTTCTTCTCCGTTCCCCCACCGCCACCGCCCCTCTCCGCGCCGCTGTCTCCCTTGTCAC CGATGAATCCTCCTCTCCCTTTACCTCCGGCTCCGATAATAATGTCTCTCGCCGCCTCATCCTCCTCCGCCACGCTCACAGTTCCCTCTCCCAACCTGCC CTCCGAGACCACGATCGTCCGCTTACTGTAACTGGCCAGTCCGAGGCAGCTAAAGTTGCGGTGGAGCTCCAGGAGCTGGGTTGGATCCCTCAGCTCATCT TGTTAAGTGATGCGGTGAGAACTAGAGAAACGCTGAAGATAATGCAGGAAAATGCACCGGCATTTTTGGAAGCGGAGGTTCGATTCATCCCTAGCTTCTA TTCCATTGCAGCCATGGATGGACAGACTGCTGACCACCTTCAGCTTTCCGTCTGTGAACATTCCACCAACGACATTCTCACCGTTATGTGCATGGGACAT AATAGAGGGTGGGAGGAAGCAGCGTCCATGTTTACTGGCACTCTTATTGAACTGAAGACTTGCAATGCTGCTTTGCTTGAAGCTGCTGGAAAATCTTGGG TAGAGGCATTTGCTTCGGCGGGGCTTGGCGGGTGGAAGCTTCAACGGATAGTGAAACCAATTGTTGGGGTGTAA
AA sequence Show only first row Show all	>Lus10040405 pacid=23174151 polypeptide=Lus10040405 locus=Lus10040405.g ID=Lus10040405.BGIv1.0 annot-version=v1.0 MMILRSTHCFCSSPSFFLHHNHTNNSNASPNPILSFSSVTPNSPHRRLLLRSPTATAPLRAAVSLVTDESSSPFTSGSDNNVSRRLILLRHAHSSLSQPA LRDHDRPLTVTGQSEAAKVAVELQELGWIPQLILLSDAVRTRETLKIMQENAPAFLEAEVRFIPSFYSIAAMDGQTADHLQLSVCEHSTNDILTVMCMGH NRGWEEAASMFTGTLIELKTCNAALLEAAGKSWVEAFASAGLGGWKLQRIVKPIVGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52155			Phosphoglycerate mutase family...		Lus10040405 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10038602 [exp]	2.8	0.7398
AT3G53540			unknown protein		Lus10025295 [exp]	5.7	0.7685
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10013848 [exp]	7.4	0.8170
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Lus10017519 [exp]	13.2	0.7002
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10007347 [exp]	18.8	0.7742
					Lus10015445 [exp]	19.4	0.7339
AT2G46520			cellular apoptosis susceptibil...		Lus10030433 [exp]	22.8	0.6935
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10040887 [exp]	26.7	0.7522
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	35.1	0.7451
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	35.7	0.7257

Compare expression of checked genes

Lus10040405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.