Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 42 / 6e-05 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT5G42700 40 / 0.0001 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023843 [exp] 130 / 4e-37 AT3G18990 81 / 9e-17 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014528 [exp] 130 / 4e-37 AT3G18990 95 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032159 [exp] 129 / 2e-36 AT3G18990 93 / 8e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10019977 [exp] 110 / 6e-32 AT3G18990 41 / 7e-05 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10000160 [exp] 92 / 4e-25 ND / Lus10015505 [exp] 91 / 2e-22 AT3G02920 231 / 8e-74 Replication protein A, subunit RPA32 (.1.2) Lus10027942 [exp] 54 / 4e-09 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10000368 [exp] 48 / 4e-07 AT5G63900 84 / 3e-17 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10012041 [exp] 44 / 1e-05 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 52 / 2e-08 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 51 / 4e-08 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 44 / 8e-06 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 43 / 2e-05 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 43 / 3e-05 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G146900 [exp] 42 / 4e-05 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 39 / 0.0007 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10040408 pacid=23174159 polypeptide=Lus10040408 locus=Lus10040408.g ID=Lus10040408.BGIv1.0 annot-version=v1.0 ATGGCGGCAATGCACCAAGCTCACGACAGAAACAGCAGGAATGGCCTCCCAATGCCACCGGAGATGCCTTCACCGATACAGGAGACTCTGTTTTCTTTGG AGAACCCTTCGTTTCTGATTGTCATCACGGCATCCCAACTACATTCAGGAAACATGTACTTTCCGGCCAGGATCACACATGAGCACATGAATGAACATTT TCCGACGGTGACGCTGTGGGTGTTTGACGGAGAGGAGCGTGTGGTGGTGGACAAGAAGGAGCTTAAGCTGTTCGAGACGAAAAAGCATGGGAGGAAGTAT ATATGCGGGTGGATAGCGTTCTGCAAGGAACATAACCTGGTAGTGGGAGACGTCTATCTGCTCGAGCTTGTCGAGCCCGAGACCAACCTCTTCCGCGTTC GCATATTCCGTCATGGATGA
AA sequence Show only first row Show all	>Lus10040408 pacid=23174159 polypeptide=Lus10040408 locus=Lus10040408.g ID=Lus10040408.BGIv1.0 annot-version=v1.0 MAAMHQAHDRNSRNGLPMPPEMPSPIQETLFSLENPSFLIVITASQLHSGNMYFPARITHEHMNEHFPTVTLWVFDGEERVVVDKKELKLFETKKHGRKY ICGWIAFCKEHNLVVGDVYLLELVEPETNLFRVRIFRHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040408 [exp]	0	1
AT4G19410			Pectinacetylesterase family pr...		Lus10034762 [exp]	6.0	0.7582
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	7.9	0.8090
					Lus10039327 [exp]	14.4	0.7480
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10018086 [exp]	15.4	0.7815
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	19.4	0.7504
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10035475 [exp]	19.6	0.7546
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010833 [exp]	21.4	0.7336
					Lus10010597 [exp]	21.7	0.7489
AT4G27620			unknown protein		Lus10008948 [exp]	28.2	0.6975
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	29.7	0.7702

Compare expression of checked genes

Lus10040408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.