Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03250 639 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 588 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G13600 577 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G44820 426 / 3e-141 Phototropic-responsive NPH3 family protein (.1) AT5G66560 387 / 6e-126 Phototropic-responsive NPH3 family protein (.1) AT5G64330 364 / 3e-116 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT3G50840 357 / 2e-115 Phototropic-responsive NPH3 family protein (.1) AT5G48800 350 / 4e-112 Phototropic-responsive NPH3 family protein (.1) AT1G03010 325 / 1e-102 Phototropic-responsive NPH3 family protein (.1) AT5G67385 323 / 5e-102 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023523 [exp] 1149 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 860 / 0 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 850 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 591 / 0 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 591 / 0 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 573 / 0 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 567 / 0 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 424 / 3e-140 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 422 / 9e-140 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038600 [exp] 789 / 0 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 758 / 0 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 672 / 0 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 612 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 605 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 439 / 1e-146 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 439 / 2e-146 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 416 / 3e-137 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 409 / 2e-134 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 376 / 1e-121 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10040409 pacid=23174157 polypeptide=Lus10040409 locus=Lus10040409.g ID=Lus10040409.BGIv1.0 annot-version=v1.0 ATGGCGGGCATGAAGCTGGGATCGAATTCTGAGTGCTTCCACCGTGATGGTCATACCTGGTTCTGTTCATATGAGGGGCTTCCAAGTGATTGCGTGGTTG AAATTGGGGAATCATCCTTCCATCTCCACAAGTTTCCACTGCTCACCAGAAGTAAAGTACTAGGAAATCTTATTGCAGAACAATCTAGTACTGAGAATTG TATTGTCCAACTTGACGATCTACCTGGTGGAACCAACAGCTTTTTGCTGGTGGCCAAGTTCTGCTACGGTGTTCAAATCGAGCTTGATGCATTGAACATA GTCCGTCTGCGATGTGCTGCTGAATATCTCGGCATGACTGAAGAAAAGGGAGAAGGGAATCTCATATACCAGACCGAAAATTTCCTCAACGAAGTGTTTA GCCACTGGACAGACTCTCTCCAAGCTCTCGAGATGTGCGAAGAGGTTCTCCCTCTTGCGGAAGAGCTGCACATTGTTTCGAGATGCATCCGTTCCCTGGC AATGAAAGCTTGCGCTGAACCGAGTTTGTTCAGCTGGCCGATGTCAGCACGCAGTGCTGACAATAACATTTGCTGGAATGGAATATGGACATCATCAGCA GCCAAGCCGAATCATCTGGCATCTGGTGATGATTGGTGGTATGAAGATTTGTCTTTCTTAACGTTACCGCTGTACAAGAGGTTGATTCAGGAAGTGATCT CGAACGGTATGAAGCCCGAGAGGGTATCTGGAGCGCTTATGAGCTACGCCAGGAGGTACTTACCGTTACTTGGGAGACAATCAAGCTTCCAGAATGTGAA GCAAGATGCATTGGGCTCCACCATCAGAACAACTCCACAGTCCGATCAAAGGAATCTCCTTGAAGAGATAGTTGAGCTTTTGCCTGATCAGAACGGTATT GAACCAACCAAGTTTTTGCTCCGGCTTTTACGGACCGCGATACTGTTGCACGCTAGCACGTCGTGTCAGGACAATTTGGAGAAGCGGATCGGATCACAGT TGGACCAAGCGGCTTTGGAAGATCTTCTGATACCGAATGTGGGCTACTCTGCTGAGACGCTTTATGATATCGACTGCGTTCAACGGATGCTTGATCATTT CATGTTTGTGGACCGGGATGATGATGTTCCGACATCGGATGATTATGTGTTGAACGATCAGCAGGGTGCCCGTTCGTTGACGCCAGTGACATTGGTGGCT AATTTGATTGATAATTATCTGGCGGAGGTGGCTCCTGATGTCAACTTTAAGCTTGCTAAGTTTCAGTCGCTGGCTGGGCTTATCCCTGATTATGCACGGC CGATTGACGACGGAATCTATCGCGCAATTGACATATATCTTAAGGCACATCCATGGCTGACAGATTCAGAAAGGGAGCTACTATGCAGACTAATGAACTG CCAGAAGCTGTCACTAGAGGCAAGCACTCACGCAGCACAGAACGAAAGGCTACCCCTTCGCGTGATAGTGCAAGTTCTCTACTTCGAACAACTTCGACTC CGCACCTCAGTTGCCGGGTGGTTCTACATATCGGAAAACCTCGACGGTAATAACCACCTTGCGCTGGTGAGGAACATCAACGGCGACGAAGGTGTAGATG ATGATGATGATGGGATAGTACTACAAGAACAGAGCAACGTGGAGGCTGAGATGAAGAAGCGAGTGATGGAGCTTGAGAAAGAGTGCATGAGCATGAAACA GGAGATTGAGAAGCTTATGATAACGAAGAGCAAAGGGAGCTGGAATGTGCTGCTGAGGAAGTTGGGATTTGGCAGAACTGTGAAACAGAATGGTGGTACT ACTACTACTACTACTGATGATCATCAACCGAAGAAACCGGAAGCCGGAAGAGATAGTAATGGTAAAGAATCGCCGATCCCAAAATCAACAGCACCGTTGG TGGTGAACGGTGCTGGAGGAGATGGTAATGATCATCACGGTGATGATTGA
AA sequence Show only first row Show all	>Lus10040409 pacid=23174157 polypeptide=Lus10040409 locus=Lus10040409.g ID=Lus10040409.BGIv1.0 annot-version=v1.0 MAGMKLGSNSECFHRDGHTWFCSYEGLPSDCVVEIGESSFHLHKFPLLTRSKVLGNLIAEQSSTENCIVQLDDLPGGTNSFLLVAKFCYGVQIELDALNI VRLRCAAEYLGMTEEKGEGNLIYQTENFLNEVFSHWTDSLQALEMCEEVLPLAEELHIVSRCIRSLAMKACAEPSLFSWPMSARSADNNICWNGIWTSSA AKPNHLASGDDWWYEDLSFLTLPLYKRLIQEVISNGMKPERVSGALMSYARRYLPLLGRQSSFQNVKQDALGSTIRTTPQSDQRNLLEEIVELLPDQNGI EPTKFLLRLLRTAILLHASTSCQDNLEKRIGSQLDQAALEDLLIPNVGYSAETLYDIDCVQRMLDHFMFVDRDDDVPTSDDYVLNDQQGARSLTPVTLVA NLIDNYLAEVAPDVNFKLAKFQSLAGLIPDYARPIDDGIYRAIDIYLKAHPWLTDSERELLCRLMNCQKLSLEASTHAAQNERLPLRVIVQVLYFEQLRL RTSVAGWFYISENLDGNNHLALVRNINGDEGVDDDDDGIVLQEQSNVEAEMKKRVMELEKECMSMKQEIEKLMITKSKGSWNVLLRKLGFGRTVKQNGGT TTTTTDDHQPKKPEAGRDSNGKESPIPKSTAPLVVNGAGGDGNDHHGDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	0	1
					Lus10001494 [exp]	2.0	0.8251
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	2.6	0.8320
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	7.1	0.8208
AT1G26160			Metal-dependent phosphohydrola...		Lus10035072 [exp]	7.7	0.7734
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	8.1	0.8125
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10027422 [exp]	8.1	0.8082
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021656 [exp]	8.8	0.7901
AT5G27970			ARM repeat superfamily protein...		Lus10004115 [exp]	9.8	0.8186
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	9.9	0.7858
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	14.1	0.7790

Compare expression of checked genes

Lus10040409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.