Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01720 611 / 0 Ribophorin I (.1) AT1G76400 433 / 6e-147 Ribophorin I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023524 [exp] 837 / 0 AT2G01720 650 / 0.0 Ribophorin I (.1) Lus10025159 [exp] 459 / 3e-157 AT1G76400 843 / 0.0 Ribophorin I (.1) Lus10016038 [exp] 300 / 1e-96 AT1G76400 595 / 0.0 Ribophorin I (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223500 [exp] 684 / 0 AT2G01720 683 / 0.0 Ribophorin I (.1) Potri.008G038700 [exp] 677 / 0 AT2G01720 677 / 0.0 Ribophorin I (.1) Potri.005G255000 [exp] 451 / 7e-154 AT1G76400 816 / 0.0 Ribophorin I (.1) Potri.002G006600 [exp] 446 / 4e-152 AT1G76400 817 / 0.0 Ribophorin I (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04597 [flax] [poplar] Ribophorin_I Ribophorin I
Representative CDS sequence Show only first row Show all	>Lus10040410 pacid=23173996 polypeptide=Lus10040410 locus=Lus10040410.g ID=Lus10040410.BGIv1.0 annot-version=v1.0 ATGGAGGCTTCACTGAGATCGCCGCCACGAACTGCCGCCTTCTTGATCTGCGCATTTCTCTCGCTTCTCATCGTTTCATCCTCCGCCGTGCAGGAGATCC AAATTCTCAACGCCGAACGTCGAATTGACTTGAGTTCACAGATTGCTGTGGTATTCTTGACTCTAAAGGTCGAAAATACAGGAAGTGCAGCTGCTTCTGA AATCCTTCTTGCATTTTCTCCCACTGAATCCGATCACCTGGCAGTGGTCAAGGCAAAAGTGGCTAGCGGAAAGAAAAGGAAGAAAACATACGTACAGCTT GATGTTAGTCCAACAGAGGTACCTGATGCACCAAGTGGAACTAAGTATCACAAAGTGTCGTTGGTTAATCCTCTAAGCCCTGGTGATACAACCACCCTTG AAATTCTATATATGTTGACACATTCCATGGAACCTTTCCCTGCGGAGATTAGTCAATCAGAACCGCAGCTGGTGTACTATCGTGACAGTGCACTTATACC GTCACCGTACCATATTAAGAAGCAGGCAACTTTTGTCAAAACACCAAGCACAAATGTTGTATCATATACTAGAGTGGAGCCGACTAACAAAGCTGGTATA GAACTAAAGTATGGACCATATGAAGATCGTCCTGCATACTCGTTCACTCCAGTGTTGGTTCATTTTGAGAACAACAACCCATTTGCTGTTGTTGAGGAGC TTGTACGTGAAGTTGAAATCTCACATTGGGGAAACGTTCAGATTACGGAGCACTATACATTAGCTCATGGTGGTGCTAGACTTAAGGGAATTTTTTCTAG GGTTGACTATCAATCTAGGCAATCTACTGGCGGTGTATCTTCATTCAAAAACTTTCTAGCAAGACTGCCTCCTAGGGTGCACTCTGTATACTATCGAGAT CAAATCGGGAACATTTCCTCTTCTCGTCTGCGTACAGATTCTCGCAAGTCGGAGCTTGAAATTGAACCACGGTATCCCCTGTTTGGAGGGTGGAAATCCA CCTTCATAATTGGATATGGCCTTCCGTTGGAAGATTTCCTCTTTGAAGCTGCTAATGGCACGAGATATCTCAACTTTACCTTTGGCTGCCCTCTGTCTGG GACCGTTGTAGACAAGTTGATCGTGAAGGTTGTGTTGCCAGAAGGATCCAAAGATCCTTCCGCTGAAGTTCCCTTTTCAGTGGAGCAACATCTAGAGACT AAGTACTCATATCTTGATGTTGTCGGAAGGCCTGTTATGGTTATAGAGAAGAAGAATGTAGTCCCTGAGCACAATACCCCCTTTCAGGTGTATTATACGT TTAACCCAGTGTTCATGCTAGCAGAGCCATTGATGCTGGTGTCAGTCGTTTTCTTCCTTTTCGTGTCATCTGTAGCTTACCTACATATGGATCTTTCAAT ACGCAAAGGATAG
AA sequence Show only first row Show all	>Lus10040410 pacid=23173996 polypeptide=Lus10040410 locus=Lus10040410.g ID=Lus10040410.BGIv1.0 annot-version=v1.0 MEASLRSPPRTAAFLICAFLSLLIVSSSAVQEIQILNAERRIDLSSQIAVVFLTLKVENTGSAAASEILLAFSPTESDHLAVVKAKVASGKKRKKTYVQL DVSPTEVPDAPSGTKYHKVSLVNPLSPGDTTTLEILYMLTHSMEPFPAEISQSEPQLVYYRDSALIPSPYHIKKQATFVKTPSTNVVSYTRVEPTNKAGI ELKYGPYEDRPAYSFTPVLVHFENNNPFAVVEELVREVEISHWGNVQITEHYTLAHGGARLKGIFSRVDYQSRQSTGGVSSFKNFLARLPPRVHSVYYRD QIGNISSSRLRTDSRKSELEIEPRYPLFGGWKSTFIIGYGLPLEDFLFEAANGTRYLNFTFGCPLSGTVVDKLIVKVVLPEGSKDPSAEVPFSVEQHLET KYSYLDVVGRPVMVIEKKNVVPEHNTPFQVYYTFNPVFMLAEPLMLVSVVFFLFVSSVAYLHMDLSIRKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	0	1
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	1.0	0.9678
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	3.7	0.9655
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	3.7	0.9612
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	4.6	0.9644
AT4G16180			unknown protein		Lus10037780 [exp]	4.9	0.9545
AT2G46900			unknown protein		Lus10010275 [exp]	5.1	0.9420
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	5.7	0.9582
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10035414 [exp]	6.7	0.9627
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	6.9	0.9626
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	8.0	0.9639

Compare expression of checked genes

Lus10040410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.