Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54740 48 / 6e-07 SESA5 seed storage albumin 5 (.1) AT4G27140 42 / 8e-05 SESA1, AT2S1 seed storage albumin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023525 [exp] 149 / 1e-46 AT5G54740 39 / 3e-04 seed storage albumin 5 (.1) Lus10040396 [exp] 69 / 1e-14 AT5G54740 62 / 2e-12 seed storage albumin 5 (.1) Lus10040397 [exp] 68 / 1e-14 ND 39 / 5e-04 Lus10031886 [exp] 61 / 1e-11 ND / Lus10040395 [exp] 59 / 4e-11 AT4G27170 60 / 1e-11 seed storage albumin 4 (.1) Lus10023513 [exp] 54 / 2e-09 AT5G54740 60 / 1e-11 seed storage albumin 5 (.1) Lus10031312 [exp] 52 / 2e-08 ND / Lus10040407 [exp] 47 / 9e-07 ND / Lus10023514 [exp] 38 / 0.0006 AT5G54740 41 / 1e-05 seed storage albumin 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G134600 [exp] 69 / 4e-15 AT5G54740 56 / 2e-10 seed storage albumin 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040411 pacid=23173821 polypeptide=Lus10040411 locus=Lus10040411.g ID=Lus10040411.BGIv1.0 annot-version=v1.0 ATGGCGAAGCATGCAGCAGCACTCGCATTCCTCCTCCTGGCGGCACTGGCGTCCGAGGCATCATCAGTCCGAACCACCGTGATCATCGAAGAGGCCGAAA ACGTAATCGGCAGAGGGAGCTGCACGCAGCAGCTGCAGGACCAAGGGTACCTGAACCACTGCCAGCAGTACCTGGTCCAGGAGGCTGGCCGCGAGACCCG GGGATGGTCCACGTGGGGCCAACAAGACCCGCAGGGGCATTTCAACATGTGCTGCAACCAGCTGAGGCGGATGGACTCCGAGTGCACTTGCATGGGCCTC GAGAGGGCCGTGGAGGCCATGCTGCAGCTGAAGCAACGAGGGTTGCAGACCTGGGGTACTTTAGATGTGCAGTCGGCTCAGCGGCTCGCGGAGACTCTGC CCGGGAAGTGCGTGAGTAGCCCCGCCAGTTGCCAGCTGAAGCAAGGAGGGTTGCAGACCTGGGGTGCTTTAGATGTGCAGGCGGCTCAGCGGCTCGCGGA GACTCTGCCCGGGAAGTGCGTGAGTAGCCCCGCCAGTTGCAGGATCAGCATCCGCTCCACTTCGTTCTGA
AA sequence Show only first row Show all	>Lus10040411 pacid=23173821 polypeptide=Lus10040411 locus=Lus10040411.g ID=Lus10040411.BGIv1.0 annot-version=v1.0 MAKHAAALAFLLLAALASEASSVRTTVIIEEAENVIGRGSCTQQLQDQGYLNHCQQYLVQEAGRETRGWSTWGQQDPQGHFNMCCNQLRRMDSECTCMGL ERAVEAMLQLKQRGLQTWGTLDVQSAQRLAETLPGKCVSSPASCQLKQGGLQTWGALDVQAAQRLAETLPGKCVSSPASCRISIRSTSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10040411 [exp]	0	1
AT3G63170			Chalcone-flavanone isomerase f...		Lus10032083 [exp]	8.5	0.8233
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	12.2	0.8158
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	15.0	0.8157
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041657 [exp]	16.3	0.6330
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10032129 [exp]	17.3	0.8157
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10033879 [exp]	19.4	0.8157
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	21.2	0.8157
					Lus10028570 [exp]	22.9	0.8157
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030693 [exp]	24.5	0.8157
AT5G41761			unknown protein		Lus10017552 [exp]	26.0	0.8157

Compare expression of checked genes

Lus10040411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.