Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14145 182 / 2e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023526 [exp] 239 / 7e-83 AT4G14145 199 / 7e-67 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223700 [exp] 179 / 4e-59 AT4G14145 168 / 6e-55 unknown protein Potri.008G038500 [exp] 82 / 2e-21 AT4G14145 80 / 8e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040412 pacid=23174098 polypeptide=Lus10040412 locus=Lus10040412.g ID=Lus10040412.BGIv1.0 annot-version=v1.0 ATGACAACGATAGAGACAGCAGCCGGCCGCCCGCGGAAGACGGTGGACGGCGGCGTTGTTCCTACTCCCGCCGCTGCTGCTGCAACCAGCAAGGTTGAAC AGAGCAAAATCGGGTCGTTCAAAAGATGGGGAAGGAGGTATCCGTTTGTGAGATATGGACTCCCCATGATTTCCCTCACTGTGATCGGTGCTCTTGGCCT TGGTCATCTCTTGCAAGGCAGCAAAGATATTGCTAAAGTAAAAGACGATCAAGAATGGGAGATCATTGAGACTAGGAAGGCACTGTCAAGAACGGGGCCT GTCAATGCTTATAAACCCAAAAAGATTTCAATGGAAGAGGAGCTGCAGGCTCTGCAGCAGAAAGTGAACATAGACAACTACGAGTACAAGAAAATTCCAA AGCCAAATGAAAGCTGA
AA sequence Show only first row Show all	>Lus10040412 pacid=23174098 polypeptide=Lus10040412 locus=Lus10040412.g ID=Lus10040412.BGIv1.0 annot-version=v1.0 MTTIETAAGRPRKTVDGGVVPTPAAAAATSKVEQSKIGSFKRWGRRYPFVRYGLPMISLTVIGALGLGHLLQGSKDIAKVKDDQEWEIIETRKALSRTGP VNAYKPKKISMEEELQALQQKVNIDNYEYKKIPKPNES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14145			unknown protein		Lus10040412 [exp]	0	1
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	1.4	0.7855
AT3G09470			Major facilitator superfamily ...		Lus10023760 [exp]	4.5	0.6809
AT5G38600			Proline-rich spliceosome-assoc...		Lus10003067 [exp]	11.0	0.6631
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	12.5	0.6609
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	15.4	0.7137
AT4G17750	HSF	ATHSFA1A, ATHSF...	ARABIDOPSIS THALIANA CLASS A H...		Lus10023636 [exp]	16.6	0.6378
					Lus10024153 [exp]	17.4	0.7475
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	19.5	0.6923
					Lus10022247 [exp]	20.1	0.5996
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	20.2	0.6697

Compare expression of checked genes

Lus10040412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.