Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38970 811 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 733 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G60710 703 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 560 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 225 / 7e-64 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 176 / 1e-46 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 170 / 2e-44 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 135 / 8e-33 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT2G44581 47 / 4e-06 RING/U-box superfamily protein (.1) AT2G44578 45 / 3e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023527 [exp] 1260 / 0 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 635 / 0 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 633 / 0 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 628 / 0 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 181 / 2e-51 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 173 / 7e-46 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 152 / 5e-41 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 136 / 3e-33 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037392 [exp] 109 / 2e-27 AT5G60710 157 / 7e-45 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038450 [exp] 1007 / 0 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 978 / 0 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 753 / 0 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 477 / 3e-160 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 473 / 6e-159 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 256 / 9e-75 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 158 / 3e-41 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 150 / 1e-38 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.001G166800 [exp] 48 / 2e-05 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.007G086300 [exp] 44 / 6e-05 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10040413 pacid=23174040 polypeptide=Lus10040413 locus=Lus10040413.g ID=Lus10040413.BGIv1.0 annot-version=v1.0 ATGGGGAGTAAGTGGAGGAAAGTAAAACTGGCTTTGGGTATGAATCTTTGTGTGTATGTGCCAAGAACACTTGATGGTGGTGATTCCCCTCCAGCACCAG CTGAGAGAGTTTCAGATGTTGCCCTCCTTTCCCCTGCCGGCTGGGAGGATGTTAGGCCAATGACTCCCACACCTTCTTCTCATGGTTTGAAGCTGCTCAG AAGTGGAAGCAAAGCCTCTAAGCATACCTGCTCAATATGCCTGACCAAAATGAAAGAAGGAGGCGGCCAAGCTCTATTCACGGCAGAGTGCTCACATTCG TTCCATTTCCATTGCATTGCTTCCAATGTGAAGCATGGAAACCAAATCTGTCCAGTTTGCAGAGCAAAATGGAAAGAGATCCCTTTGCAGGCTCCAAACC TAGACCCTCCACCCGGGAGAGCCTCCATCAACGCTGTAGGGTGGCCTCACAATGATGCTTTGATGAATGTGGTACGCCGATTACCTCCCCCTCGTCGCGA CCCAAGTAGGAGGCACATTGTACCTTTACTTCAGGCTGTTGAACCTAGTGTGTTCGATGACGACGAGACTCTAGACATCCAGCCGAGAATTCCTGGCAGA AGCACTAGTTGCATTTCTGGTACATCAATCGACATCAAGGTATACCCCGAGGTTACAGCAGCATCACATTCCAGCTCTTATGAGAACTTCACTGTCCTTG TCAATCTTAAAGCTGCTGCCACAATTATGAGACAAAACCAGCCTCAACTTTCTCGGAGTCCTCGTGCTCCGGTTGACCTAGTCACTGTTCTTGACACCAG CGGTAGCATGGCAGGAACGAAACTGGCATTGCTTAAGAGAGCTATGGGGTTTGTGATACAGAATCTCGGTTCTAATGACCGGCTCTCGGTTATTGCCTTC TCATCAACAGCTCGGCGCCTCTTTCCACTGCGACGAATGTCTGATGCTGGAAGGCAGCAAGCACTTCAAGCTGTGAACTCTTTGCTTGCCAATGGTGGGA CCAATATAGCTGAAGGTTTGAGAAAGGGTGCTAAGGTAATGGAAGAGAGGAAGGAAAAGAATCCTGTTGCAAGCATAATATTGCTATCCGACGGTCAGGA TACTTACACTGTTAGTGGTGGTGGTGGTAATCAGTCTCAACCGGATTACCGGTTGCTCCTTCCTCTCTCCATCGATGGTGGCGAGAGTGCTGCTTTCCAG ATTCCGGTGCATTCATTTGGCTTCGGAGCAGATCATGATGCTTCATCAATGCATTCGATTTCAGAGATCTCGGGGGGAACCTTTTCATTCATCGAGACAG AAGCCATCATCCAGGATGCATTTGCACAGTGTATTGGAGGGCTTTTGAGTGTTGTGGTACAGGAGTTGCAGGTGGAAGTTGAATCTGTGAATCCTAACAT CAAGCTCGGATCTCTGAAAGCTGGAAGCTATCAAAGTCGTGTGTCTGCTGATCGATGCACCGGTTATATTGATGTAGGAGATTTGTATGCAGATGAAGAA AGGAATTTTCTTGTGTCTCTCAATGTTCCAGAAGAGCAGCCTTCAAATGGTCAAACCTCATTGCTTAAAGTTAAATGCTTTTACAAGGATCCGTTGACCA AAGAGATGGCCACTTTGGAAGGTGAAGAAGTTATGCTTCAGAGAGCTGAAGCAGCTGCTGGGAAGGAAGCGGTATCGATCGAAGTTGACAGGCAGCGGAA CAGGTTGAAGGCTGCCGAGGCGATGTCACAAGCGAGAACTGCAGCGGAGCAAGGAGACCTAACCAGGGCAGCTTCCATCCTTGAGAATTGTCGTAAAGAG CTGTCGAAAACCATGCCAGCTAAATCGAAGGACCGGTTATGTGTTGCACTGGACGCGGAGCTAAAGGAAATGCAGGATCGGATGACAAGTAGGAACGTGT ACGAGTCTTCTGGGAGAGCATATATACTGTCGGGTTTGAGCTCGCATTCGTGGCAAAGAGCTACGGCAAGAGGGGACTCGACCACAGGCGGTTCGAGGGC GGTTCGAGCCTTGTTCACTCTTATCAGACCCCTTCGATGA
AA sequence Show only first row Show all	>Lus10040413 pacid=23174040 polypeptide=Lus10040413 locus=Lus10040413.g ID=Lus10040413.BGIv1.0 annot-version=v1.0 MGSKWRKVKLALGMNLCVYVPRTLDGGDSPPAPAERVSDVALLSPAGWEDVRPMTPTPSSHGLKLLRSGSKASKHTCSICLTKMKEGGGQALFTAECSHS FHFHCIASNVKHGNQICPVCRAKWKEIPLQAPNLDPPPGRASINAVGWPHNDALMNVVRRLPPPRRDPSRRHIVPLLQAVEPSVFDDDETLDIQPRIPGR STSCISGTSIDIKVYPEVTAASHSSSYENFTVLVNLKAAATIMRQNQPQLSRSPRAPVDLVTVLDTSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAF SSTARRLFPLRRMSDAGRQQALQAVNSLLANGGTNIAEGLRKGAKVMEERKEKNPVASIILLSDGQDTYTVSGGGGNQSQPDYRLLLPLSIDGGESAAFQ IPVHSFGFGADHDASSMHSISEISGGTFSFIETEAIIQDAFAQCIGGLLSVVVQELQVEVESVNPNIKLGSLKAGSYQSRVSADRCTGYIDVGDLYADEE RNFLVSLNVPEEQPSNGQTSLLKVKCFYKDPLTKEMATLEGEEVMLQRAEAAAGKEAVSIEVDRQRNRLKAAEAMSQARTAAEQGDLTRAASILENCRKE LSKTMPAKSKDRLCVALDAELKEMQDRMTSRNVYESSGRAYILSGLSSHSWQRATARGDSTTGGSRAVRALFTLIRPLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10040413 [exp]	0	1
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039458 [exp]	1.4	0.8269
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	1.7	0.8422
AT1G12380			unknown protein		Lus10032194 [exp]	3.9	0.8040
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	7.7	0.7591
AT2G25920			unknown protein		Lus10002434 [exp]	16.0	0.7258
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	16.2	0.7417
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	19.1	0.7638
AT5G65490			unknown protein		Lus10012731 [exp]	19.9	0.7303
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	21.0	0.7519
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	21.6	0.7301

Compare expression of checked genes

Lus10040413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.