Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04220 667 / 0 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 602 / 0 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 567 / 0 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G05500 243 / 4e-73 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G21010 224 / 8e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 233 / 2e-69 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 212 / 5e-62 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G60950 107 / 2e-24 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 105 / 5e-24 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G21040 85 / 3e-18 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023529 [exp] 894 / 0 AT5G04220 498 / 3e-173 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 850 / 0 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 761 / 0 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10017268 [exp] 627 / 0 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10026515 [exp] 619 / 0 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10013563 [exp] 614 / 0 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019782 [exp] 592 / 0 AT2G20990 825 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10014127 [exp] 587 / 0 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10005069 [exp] 560 / 0 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038300 [exp] 791 / 0 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 780 / 0 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 655 / 0 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 645 / 0 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 609 / 0 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 606 / 0 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 256 / 6e-78 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 251 / 5e-76 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 225 / 2e-66 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 204 / 3e-59 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10040414 pacid=23173856 polypeptide=Lus10040414 locus=Lus10040414.g ID=Lus10040414.BGIv1.0 annot-version=v1.0 ATGGGTTTTTTCAGCACTGTATTGGGAATCGTTGGGTTTGGCTTTGGATTGGCCGTTGGGTTGGCTGTTGGATTCTATCTCTTTGTTTACTCCAAGCCTA AACATGTCAAGGAACCAGGGGTTAGGCCACTTGGGGAGCTGGAATCTGACACCTTGCTCAACATTCTGCATGAGATTCCTTTGTGGGTGAAATCTCCTGA CTATGAACGAGTGGATTGGTTCAACAAGTTTGTCTTGGCGATGTGGCCATATCTTGATAAGGCCATATGTGCTTCAATTAAAACCACGAGTGAGCCGATC TTCGCAGAGTGCATTGGGAAGTATGGCATCGAAGCTATCGAGTTTGAGCATCTCAGTCTTGGAACTCTTCCTCCCACTGTCCATGGTCTTAAAGTGTTGG ACACCAATGAGAATGATATAGTTCTGGAACCAGCAGTTAGGTGGGCAGGCAATCCCAACATAACTTTGGTGTTGAAATTAATGTCTATACCAATTACTGT TCAGTTGGTTGATCTGCAAGTATTTGCAGCACCAAGGATATCCTTGAAGCCTCTTGCGCCAGCTTTCCCATGTTTTGCCAACATTGTGGTGTCTTTACTG GATAGACCTCGGGTGGACTTCGGGCTTGAAATTTCTGGAGGAGATATCATGTCCATACCTGGTCTTCATGGATTTGTTCAGAAAACGATCGAAAAGCAGA TAACAAGTATGTACATTTGGCCTCGGATCCTTGAAATACCTGTCCTTGATCCTTCAACAGTTGGTGTAAAGAAACCGGTGGGAATACTGAATGTGAAGGT AGTTCGGGCTACGAAACTCATGAAGGCTGATATCGTCGGAACTTCTGATCCGTACGTGAAGCTAAGTCTGAGTGGAGACAAATTATCTGCTAAGAAGACC ACAATCAAGAAGCAGAATCTGAATCCTGTTTGGAATGAAAGCTTCAGGCTTGTTGTTAAGGATCCTGGTTCTCAAGCTCTTCATCTTCATGTGCTTGATT GGGACAAGGTTGGTGCCCATGACCCATTGGGAATGCAAGCCGTGCCCTTGAAGACAATGACACCCCAGGAGCCAAAACATCTCACTCTCGACTTGCTCAA GAGCACCGAGGCTTGTGATCCTCGCGACAGAAAACAAAGAGGGCAGCTTGTGATTGAGTTGACCCTTGTGCCTTTCAAAGAAGACAGTTCACTCAGTATC CTAGATGGACACAGCAGTAAAGGATCGAGTGGGAAGGAAAACCAGCCTTATGACGATTCACTAAATGGACCGAGTTTACTCTCGATACGAGTACAATCTG CAGAGGATGTAGAAGGACACAACCACAACAATCCCTATGCTACGGTCCTCTTCAGAGGAGAAAGGAAGAAAACTAAGATGATTCGGAAAGCTCGCAACCC ACGTTGGAACGAGGAGTTTCAGTTCATGATGGACCATCCTCCTCTGCGGGAGAAGATCCGAATCGAGGTCTTGAGCAAAAGAACAGGTTTCAGCTTCAGA TCAAGGGAATCACTGGGGTATGTGGAAGTGAATCTGGATGATGTTGTGTATAATGGAAGGATTAATGAGAAGTACCATCTCATCAATTCAAAGAGTGGAG TGATTCATGTTGAGATGCGGTGGGACAGAGTGTAA
AA sequence Show only first row Show all	>Lus10040414 pacid=23173856 polypeptide=Lus10040414 locus=Lus10040414.g ID=Lus10040414.BGIv1.0 annot-version=v1.0 MGFFSTVLGIVGFGFGLAVGLAVGFYLFVYSKPKHVKEPGVRPLGELESDTLLNILHEIPLWVKSPDYERVDWFNKFVLAMWPYLDKAICASIKTTSEPI FAECIGKYGIEAIEFEHLSLGTLPPTVHGLKVLDTNENDIVLEPAVRWAGNPNITLVLKLMSIPITVQLVDLQVFAAPRISLKPLAPAFPCFANIVVSLL DRPRVDFGLEISGGDIMSIPGLHGFVQKTIEKQITSMYIWPRILEIPVLDPSTVGVKKPVGILNVKVVRATKLMKADIVGTSDPYVKLSLSGDKLSAKKT TIKKQNLNPVWNESFRLVVKDPGSQALHLHVLDWDKVGAHDPLGMQAVPLKTMTPQEPKHLTLDLLKSTEACDPRDRKQRGQLVIELTLVPFKEDSSLSI LDGHSSKGSSGKENQPYDDSLNGPSLLSIRVQSAEDVEGHNHNNPYATVLFRGERKKTKMIRKARNPRWNEEFQFMMDHPPLREKIRIEVLSKRTGFSFR SRESLGYVEVNLDDVVYNGRINEKYHLINSKSGVIHVEMRWDRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10040414 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Lus10009092 [exp]	9.1	0.7792
AT3G13130			unknown protein		Lus10006387 [exp]	13.9	0.7784
AT2G48020			Major facilitator superfamily ...		Lus10008182 [exp]	13.9	0.7389
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002500 [exp]	16.9	0.7504
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10032727 [exp]	16.9	0.7688
AT5G57910			unknown protein		Lus10036591 [exp]	17.7	0.7632
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	24.0	0.7750
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10023529 [exp]	29.2	0.7313
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	29.7	0.7462
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10022359 [exp]	33.6	0.7441

Compare expression of checked genes

Lus10040414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.