Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37040 1196 / 0 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) AT3G53260 1190 / 0 PAL2, ATPAL2 phenylalanine ammonia-lyase 2 (.1) AT3G10340 1166 / 0 PAL4 phenylalanine ammonia-lyase 4 (.1) AT5G04230 1046 / 0 PAL3, ATPAL3 phenyl alanine ammonia-lyase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023531 [exp] 1414 / 0 AT2G37040 1198 / 0.0 PHE ammonia lyase 1 (.1) Lus10026518 [exp] 1211 / 0 AT2G37040 1256 / 0.0 PHE ammonia lyase 1 (.1) Lus10013805 [exp] 1206 / 0 AT2G37040 1245 / 0.0 PHE ammonia lyase 1 (.1) Lus10009220 [exp] 160 / 1e-41 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10001405 [exp] 125 / 4e-34 AT3G10340 122 / 3e-34 phenylalanine ammonia-lyase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G224100 [exp] 1253 / 0 AT3G53260 1240 / 0.0 phenylalanine ammonia-lyase 2 (.1) Potri.008G038200 [exp] 1249 / 0 AT2G37040 1213 / 0.0 PHE ammonia lyase 1 (.1) Potri.010G224200 [exp] 1241 / 0 AT2G37040 1228 / 0.0 PHE ammonia lyase 1 (.1) Potri.006G126800 [exp] 1225 / 0 AT2G37040 1269 / 0.0 PHE ammonia lyase 1 (.1) Potri.016G091100 [exp] 1217 / 0 AT2G37040 1267 / 0.0 PHE ammonia lyase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00221 [flax] [poplar] Lyase_aromatic Aromatic amino acid lyase
Representative CDS sequence Show only first row Show all	>Lus10040416 pacid=23173975 polypeptide=Lus10040416 locus=Lus10040416.g ID=Lus10040416.BGIv1.0 annot-version=v1.0 ATGGAGCTCTGCAGCAACGAGAACAACAACAATGGTGGTGGGTTTTCCCTCGCTGACCCGTTGAACTGGGGAATGGCGGCAGAGTCGATGAAAGGGAGCC ACTTGGAGGAGGTGAAGCGTATGGTTGAAGAGTCGAGATCCCCTGTCGTCAAGCTTGCCGGGCAGACTCTGTCCATTGCCCAAGTCGTCGCAATTTCCCG CTCCGACGCCTCGGCTGAGCTCGACGAGGAGGCCCGGCCAAGGGTGAAGGCCAGCAGCGACTGGGTGATGGAGAGCATGAACAAAGGCACGGACAGTTAC GGTGTCACGACCGGGTTCGGAGCTACGTCTCATCGTAGGACTAAGCAGGGTGGAGCCCTTCAGAGGGAGCTCATCAGGTTCTTGAACGCTGGAATATTCG GCAACGGTACAGAGTCAAACCACACGCTGCCATACTCCGCGACCAGGGCAGCCATGCTGGTCAGGATCAACACCTTGCTCCAGGGCTATTCAGGAATCCG TTTCGAAATTCTCGAGGCCATCACCAAGCTCCTCAACAACAATGTCACCCCTTGTCTACCTCTCAGGGGCACCATCACCGCCTCTGGTGACTTGGTCCCT CTATCCTACATTGCAGGCCTGTTAACCGGCCGGCCCAACTCTAAAGCTGTCGGCCCCAAGGGCGAGTCCCTCGACGCAACACAAGCCTTCCAGGCCGCTG GGATCACCGGTGGATTCTTCGAGTTGCAGCCAAAGGAAGGTCTGGCGATGGTGAACGGTACTGCAGTCGGTTCAGGAATGGCCTCGATGGTCCTTTTCGA CGCCAACATTTTGGCGGTCATGTCCGAGGTTCTCTCAGCGATTTTCGCTGAAGTTATGCAAGGTAAACCCGAGTTCACAGACCACTTGACGCATAAGCTG AAGCATCACCCTGGCCAGATCGAAGCTGCAGCGATCATGGAACATATCCTGAAGGGCAGCTCTTACGTCAAGGAAGCTGAGAAATTGCACGAAATCGATC CGTTACAGAAGCCGAAACAGGACAGATATGCTCTCAGGACGTCTCCTCAATGGCTCGGCCCGTTGATCGAAGTGATCAGGTCGTCGACGAAAATGATCGA AAGGGAGATTAATTCGGTCAATGACAATCCATTGATCGACGTCTCGAGAGGGAAGGCGATCCACGGAGGGAACTTCCAGGGAACCCCGATCGGTGTCTCG ATGGACAACACTCGTTTGGCCGTTGCTTCGATTGGGAAGCTCATGTTTGCACAGTTCTCCGAGCTTGTCAACGACTTCTACAACAACGGTCTGCCATCCA ACTTAACCGGTGGACGAAACCCCAGCTTGGACTATGGGTTCAAGGGGGCTGAAATCGCGATGGCATCCTACTGCTCCGAGCTTCAGTTCCTGGCAAATCC AGTTACAAACCATGTACAGAGCGCTGAACAACACAACCAGGATGTCAACTCATTGGGCCTGATTTCGGCTAGGAAGACTGCCGAAGCTGTGGAGATACTA AAGCTGATGTCGACAACTTACTTGGTCGCTCTATGCCAAGCAGTCGATTTAAGGTATATCGAGGAGAATCTGAAGCAGACAGTTAAGAACACGATCAGCC AAGTTGCGAAGAAAGTACTCCTGACCAACGGGGAGCTGCTCCACCCGTCGAGATTCTGCGAGAAGGAGCTCTTGAATGTTGCAGAGAGGGAGTACTTGTT TGCATACGCAGACGATCCTTGCAGCGCAACCTACCCTCTGATGCAGAAGCTGAGAGGGGTGCTGGTGGAGCACGCGTTGCTGAACGGTGAGAGCGAGAAA GACTCGAGCACTTCCATCTTCCATAAGATTGCGGTGTTCGAGGAGGAGCTGAAGGCTATCCTGCCGAAAGAAGTTGAGAATGCAAGGAGCGAGCTGGAGA AAGGGAATCCGGCTATCCCGAACAGGATCAAGGAATGCAGGTCGTATCCGTTGTACAAGTTTGTGAGGGAGGAAGTTGGTACCAGTTTGCTTACGGGTGA GAAGGTTAAGTCACCAGGTGAGGAATTTGACAAGGTGTTCACTGCTATGTGTGAAGGGAAGCTCATTGACCCTTTGTTGGAGTGCCTCAAAGAATGGAAT GGTGCTCCTCTTCCCATCTGCTAG
AA sequence Show only first row Show all	>Lus10040416 pacid=23173975 polypeptide=Lus10040416 locus=Lus10040416.g ID=Lus10040416.BGIv1.0 annot-version=v1.0 MELCSNENNNNGGGFSLADPLNWGMAAESMKGSHLEEVKRMVEESRSPVVKLAGQTLSIAQVVAISRSDASAELDEEARPRVKASSDWVMESMNKGTDSY GVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGNGTESNHTLPYSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVP LSYIAGLLTGRPNSKAVGPKGESLDATQAFQAAGITGGFFELQPKEGLAMVNGTAVGSGMASMVLFDANILAVMSEVLSAIFAEVMQGKPEFTDHLTHKL KHHPGQIEAAAIMEHILKGSSYVKEAEKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRSSTKMIEREINSVNDNPLIDVSRGKAIHGGNFQGTPIGVS MDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVEIL KLMSTTYLVALCQAVDLRYIEENLKQTVKNTISQVAKKVLLTNGELLHPSRFCEKELLNVAEREYLFAYADDPCSATYPLMQKLRGVLVEHALLNGESEK DSSTSIFHKIAVFEEELKAILPKEVENARSELEKGNPAIPNRIKECRSYPLYKFVREEVGTSLLTGEKVKSPGEEFDKVFTAMCEGKLIDPLLECLKEWN GAPLPIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	0	1
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10009396 [exp]	1.0	0.9827
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	2.4	0.9780
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005950 [exp]	4.0	0.9664
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	4.0	0.9728
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	4.2	0.9732
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	4.6	0.9706
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	4.9	0.9713
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	5.5	0.9654
AT1G48780			unknown protein		Lus10009004 [exp]	6.6	0.9230
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	7.7	0.9728

Compare expression of checked genes

Lus10040416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.