Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 362 / 4e-126 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023534 [exp] 561 / 0 AT5G24090 355 / 1e-123 chitinase A (.1) Lus10009215 [exp] 432 / 6e-154 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10023535 [exp] 419 / 1e-148 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10040420 [exp] 415 / 2e-147 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10009216 [exp] 410 / 4e-145 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10037985 [exp] 407 / 6e-144 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10010137 [exp] 363 / 8e-127 AT5G24090 330 / 1e-113 chitinase A (.1) Lus10001868 [exp] 361 / 4e-126 AT5G24090 332 / 1e-114 chitinase A (.1) Lus10037984 [exp] 361 / 6e-124 AT5G24090 322 / 1e-108 chitinase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G091700 [exp] 431 / 2e-153 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.002G242000 [exp] 429 / 8e-153 AT5G24090 387 / 3e-136 chitinase A (.1) Potri.002G165700 [exp] 429 / 1e-152 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.014G091600 [exp] 378 / 1e-132 AT5G24090 362 / 3e-126 chitinase A (.1) Potri.015G024200 [exp] 377 / 3e-132 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.015G024000 [exp] 368 / 8e-129 AT5G24090 337 / 2e-116 chitinase A (.1) Potri.015G024100 [exp] 368 / 9e-129 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G023900 [exp] 360 / 2e-125 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.015G024150 [exp] 360 / 2e-125 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.012G033866 [exp] 360 / 2e-125 AT5G24090 352 / 3e-122 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10040419 pacid=23174035 polypeptide=Lus10040419 locus=Lus10040419.g ID=Lus10040419.BGIv1.0 annot-version=v1.0 ATGTTAGCTTTTTCCAGAGCAGCAATCTCAGTACTGTGGCTCTTGCTGTCAATGCTCAAGAGTTCAGAAGCTGGAAGCATAGCGATCTACTGGGGACAAA ACGGAAACGAAGCGAGCCTGGGAGAGACCTGTGCAACTGGAGACTACAGATATGTGATAATAGCTTTCCTGCCAACATTTGGCAACAGCCAAACACCAAC GATCAACCTCGCCGGGCATTGCAATCCGACATCTGGAGGCTGTGAAGGACTAAGCTCCGAGATAAAGTCGTGTCAAGAGAAAGGTGTCAAGGTCTTGCTC TCCATTGGAGGTGGAGTTGGCAGTTACTATCTTACAAGTACAGACGATGCAAGAAAAGTTGCAACTTACCTGTGGGACAATTTTTTAGGCGGGCATTCCT CATCAAGGCCACTCGGCGAGGCAGTTCTCGACGGGATTGATTTTGACATTGAAGGAGGGAGTACCGACCACTGGAGCGATCTCGCGAGGTTCCTGAAACA TCACGAAAATGGTCAAAAGAAAGTATATGTAACTGCAGCACCACAATGTATATTCCCGGATGCATGGGTTGGAAGCGCACTCACCACGGGCCTTTTTGAC TACCTTTGGGTGCAATTCTACAACAACCCTCCTTGCCAATACTCTGATGGGAGCATCGAGGGACTCGTAGATGCTTGGCATCAATGGACTGAGTCCATTC CCACTAAAAAGGTGTTCTTGGGGCTCCCTGCCGCAGAAGGTGCAGCAGGCAGTGGTTTTATCCCTGCTCATGATCTGATCAACAAGGTATTGCCTAAAAT CAAGGAATCTAACAAGTATGGCGGTGTTATGTTGTGGTCAAAGTACTATGATGAACAGAGTGGATACAGTAAGGCCATTAAGAACCATGTCTGA
AA sequence Show only first row Show all	>Lus10040419 pacid=23174035 polypeptide=Lus10040419 locus=Lus10040419.g ID=Lus10040419.BGIv1.0 annot-version=v1.0 MLAFSRAAISVLWLLLSMLKSSEAGSIAIYWGQNGNEASLGETCATGDYRYVIIAFLPTFGNSQTPTINLAGHCNPTSGGCEGLSSEIKSCQEKGVKVLL SIGGGVGSYYLTSTDDARKVATYLWDNFLGGHSSSRPLGEAVLDGIDFDIEGGSTDHWSDLARFLKHHENGQKKVYVTAAPQCIFPDAWVGSALTTGLFD YLWVQFYNNPPCQYSDGSIEGLVDAWHQWTESIPTKKVFLGLPAAEGAAGSGFIPAHDLINKVLPKIKESNKYGGVMLWSKYYDEQSGYSKAIKNHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040419 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	2.2	0.8685
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	4.2	0.8604
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10003894 [exp]	5.3	0.8047
AT3G28630			Protein of unknown function (D...		Lus10001124 [exp]	5.5	0.7999
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10040063 [exp]	6.6	0.8196
AT1G11070			unknown protein		Lus10038307 [exp]	7.7	0.8239
					Lus10028090 [exp]	8.5	0.8077
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Lus10017388 [exp]	11.0	0.7976
AT2G31420	B3		Domain of unknown function (DU...		Lus10039058 [exp]	12.6	0.8137
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10000431 [exp]	12.7	0.7708

Compare expression of checked genes

Lus10040419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.