Plant FIBer expression Database

Lus10040421 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023536
[exp]
149 / 1e-46 ND /
Lus10000178
[exp]
149 / 2e-45 ND /
Lus10019772
[exp]
133 / 4e-36 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Lus10012947
[exp]
104 / 3e-29 ND /
Lus10029608
[exp]
102 / 4e-28 ND /
Lus10025569
[exp]
103 / 2e-26 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3)
Lus10017290
[exp]
98 / 6e-25 ND /
Lus10013548
[exp]
99 / 7e-25 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3)
Lus10017291
[exp]
97 / 5e-24 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10040421 pacid=23174030 polypeptide=Lus10040421 locus=Lus10040421.g ID=Lus10040421.BGIv1.0 annot-version=v1.0
ATGGAAAAAAGAGTGGGGAGCTGGGTCGCTGCTTTAGTCTGCCGAATGACCGATCCTTCGCAGTGGTCATCACTGCTTATTCCAGCGGGCAGGCCATCGA
TGGTTGACTTGATTGTAGACTTCCAAGCTCCAGGTCCGCTCGAGCTCAAAGCACAACTTGGTTTGGATGAAATTGTATCAGAAGCTGCTGCTACTGATGA
ACCTGAAGTAATTGAGGATGATCAATCTCACCAGTCTACCGACGAATCATTGTCCCAGCCCCTTCAACCAGAGCTGCAGGCAGAGGTATCTAAACTTGGG
GAAGAAGGCTCGAAGCTGGATGTCGAAATTCAGCAATTAACTGCTCGGAGGGCCAAAATTCTCGAACGCGAGAATTCTACTATGGTCGAACTGGAGAAGG
CTAACCAAGAGGCTTCCATGGAACTGGATGAACTGAAGAAGGAAAATGACGAGATGAATCAAGCAGGCAAAAAGCGGATGAGTGCCATGGAGGAACTAGT
TCAGGCTAATGCAAGTTGGAAACTTTTCAAGAATTTAGGATGGAAATAG
AA sequence
>Lus10040421 pacid=23174030 polypeptide=Lus10040421 locus=Lus10040421.g ID=Lus10040421.BGIv1.0 annot-version=v1.0
MEKRVGSWVAALVCRMTDPSQWSSLLIPAGRPSMVDLIVDFQAPGPLELKAQLGLDEIVSEAAATDEPEVIEDDQSHQSTDESLSQPLQPELQAEVSKLG
EEGSKLDVEIQQLTARRAKILERENSTMVELEKANQEASMELDELKKENDEMNQAGKKRMSAMEELVQANASWKLFKNLGWK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10040421
[exp]
0 1
AT1G26930 Galactose oxidase/kelch repeat... Lus10023608
[exp]
2.2 0.8508
AT3G23730 XTH16 xyloglucan endotransglucosylas... Lus10000678
[exp]
4.7 0.8287
AT4G05230 Ubiquitin-like superfamily pro... Lus10007641
[exp]
5.2 0.9072
AT1G79460 ATKS1, ATKS, GA... GA REQUIRING 2, ARABIDOPSIS TH... Lus10006924
[exp]
7.1 0.7692
AT1G58060 RNA helicase family protein (.... Lus10012694
[exp]
8.9 0.7300
AT2G34930 disease resistance family prot... Lus10001034
[exp]
9.8 0.7084
AT1G24590 AP2_ERF ESR2, DRNL, SOB... FOR SUPPRESSOR OF PHYTOCHROMEB... Lus10035076
[exp]
9.9 0.7077
AT1G22440 Zinc-binding alcohol dehydroge... Lus10009517
[exp]
11.0 0.8704
AT4G36220 CYP84A1, FAH1, ... ferulic acid 5-hydroxylase 1 (... Lus10000326
[exp]
11.1 0.8538
AT1G35467 RALFL5 RALF-like 5 (.1) Lus10006213
[exp]
13.7 0.7131

Lus10040421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.