Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10490 243 / 4e-76 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT3G10480 225 / 2e-69 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT5G04400 126 / 2e-32 NAC ANAC077 NAC domain containing protein 77 (.1) AT3G10500 117 / 1e-28 NAC ANAC053 NAC domain containing protein 53 (.1) AT5G04410 117 / 2e-28 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G17730 100 / 2e-24 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G64060 102 / 4e-24 NAC ANAC103 NAC domain containing protein 103 (.1) AT3G03200 96 / 2e-21 NAC ANAC045 NAC domain containing protein 45 (.1) AT1G54330 94 / 2e-21 NAC ANAC020 NAC domain containing protein 20 (.1) AT5G17260 94 / 7e-21 NAC ANAC086 NAC domain containing protein 86 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023537 [exp] 483 / 1e-170 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10038670 [exp] 428 / 2e-139 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10037939 [exp] 379 / 1e-129 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10028824 [exp] 110 / 2e-26 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10017458 [exp] 110 / 2e-26 AT5G04410 379 / 8e-126 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10042284 [exp] 100 / 6e-24 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 100 / 9e-24 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10028372 [exp] 93 / 7e-21 AT2G18060 349 / 4e-119 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10010959 [exp] 94 / 9e-21 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229700 [exp] 275 / 1e-88 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.010G229900 [exp] 130 / 3e-33 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.008G031800 [exp] 122 / 3e-30 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.015G030200 [exp] 102 / 7e-25 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.012G038100 [exp] 100 / 1e-23 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.008G081500 [exp] 96 / 6e-22 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.007G109100 [exp] 96 / 1e-21 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Potri.004G081000 [exp] 95 / 7e-21 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.005G058900 [exp] 93 / 1e-20 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.010G174600 [exp] 92 / 1e-20 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10040422 pacid=23173959 polypeptide=Lus10040422 locus=Lus10040422.g ID=Lus10040422.BGIv1.0 annot-version=v1.0 ATGGCTCCAGAATCAGAAACCCCCACCGCTATTCCCTTACCTCCGGCCGCGGCGGCGCCGACTAGCACTGCCACTTTGGTGTCAGCTCCGGCGGAGCCGC CCCGTAAGACGCAGCCAGCAGCTTCCAGTACCACCGCTTTGGCCCCCGGTTTTCGATTCCATCCAACTGATGAGGAGCTGGTTAGCTATTACTTGAGGCG TAAGGTTGGGAGCAAGCCCGTCCGCTTCAATGCCATCGGTGAAGTCGATATCTATCGAAACGAGCCCTGGGAACTCGCCGACAAGTCGAGGTTGAAAACC AGAGACCAAGAGTGGTACTTCTATGGTGCATTGGATAGGAAGTACGGCTTAGTTGACGAGGAGTTGGAGAGACTCGGCAATCTTCAGGGAGATTCATTTG TGCTATGTAGAGTGTTTCACAAGAACAATATTGGACCCCCAAACGGAAACCGATATGCTCCTTTTATGGAGGAAGAGTGGGATGATGATAGTAAGCCAGT CCTTGTCCCCGGAGAAGATGTGGCAGATGAACGTGTAGCTTGCAATGAAGCTTATACTGAGATGAACCGTGTTGAGCAGGACAAGTACTCAATTAGCAAA GAACCATTCGATGTGAACGAAGTTCCGAAGGTGACCCGAGATCTCTTATCCCTGTGCAAGAATGAAACCGTGGAAGAGATGGAGGAGCTGGATGCTCCGA TGTGTGTTCTCAACACAGAAGCTCAATTCCCGCTGATCCAATACAAAAGAAGAAAGCATGGCCATGATTACGATTCCAACGGCTCCGAGAAGTCAACAAC CCGGACACCCCAGGACCTCTGCTCATCCACCACAACCACAACAGATACGATGCTGACCGCAACTGCTGCAACAACCACAGCCATCTCTGCACTGCTGGAG TTCTCTCTGATGGAGCCTAAGGAACGTACACCTTCCCCGAAGAAACCCACATCCAGTAGTCCGGCTAGCCTCGAGTCTCTGGTCCCTTCTGGGTGTATGA AGCTCATCAACGACCTGCAGAGCGAGGTCCACAAAGTCTCGGTCGATAGAGAGACTCTGAAGCTGGAACTGATGAGGGCTAACGCCATGGCCAACATTCT CCAGTCGAGGATCGATCATCTCAACGAGGAGAATAAGGATCTGAAAAGGAATCTCCGTGAAGGCAATTAG
AA sequence Show only first row Show all	>Lus10040422 pacid=23173959 polypeptide=Lus10040422 locus=Lus10040422.g ID=Lus10040422.BGIv1.0 annot-version=v1.0 MAPESETPTAIPLPPAAAAPTSTATLVSAPAEPPRKTQPAASSTTALAPGFRFHPTDEELVSYYLRRKVGSKPVRFNAIGEVDIYRNEPWELADKSRLKT RDQEWYFYGALDRKYGLVDEELERLGNLQGDSFVLCRVFHKNNIGPPNGNRYAPFMEEEWDDDSKPVLVPGEDVADERVACNEAYTEMNRVEQDKYSISK EPFDVNEVPKVTRDLLSLCKNETVEEMEELDAPMCVLNTEAQFPLIQYKRRKHGHDYDSNGSEKSTTRTPQDLCSSTTTTTDTMLTATAATTTAISALLE FSLMEPKERTPSPKKPTSSSPASLESLVPSGCMKLINDLQSEVHKVSVDRETLKLELMRANAMANILQSRIDHLNEENKDLKRNLREGN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10040422 [exp]	0	1
AT5G10990			SAUR-like auxin-responsive pro...		Lus10042374 [exp]	4.0	0.7092
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10037698 [exp]	5.7	0.7646
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10015692 [exp]	12.9	0.7305
AT3G54630			unknown protein		Lus10030643 [exp]	23.3	0.6715
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	23.4	0.7109
AT1G23890			NHL domain-containing protein ...		Lus10030849 [exp]	24.4	0.6714
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	26.5	0.6307
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	28.4	0.6643
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	29.8	0.6968
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10008437 [exp]	31.6	0.6602

Compare expression of checked genes

Lus10040422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.