Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03530 275 / 1e-94 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT3G09910 249 / 3e-84 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT1G43890 244 / 4e-82 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT5G47200 173 / 2e-54 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT4G17530 173 / 2e-54 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT1G02130 172 / 7e-54 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT3G11730 169 / 8e-53 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT3G09900 160 / 4e-49 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT1G18200 158 / 3e-48 AtRABA6b RAB GTPase homolog A6B (.1) AT5G59840 157 / 4e-48 Ras-related small GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037940 [exp] 302 / 2e-104 AT5G03530 244 / 9e-82 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10038671 [exp] 298 / 5e-103 AT5G03530 241 / 8e-81 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10023910 [exp] 260 / 2e-88 AT5G03530 353 / 2e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10014409 [exp] 258 / 1e-87 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10021507 [exp] 257 / 3e-87 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10022608 [exp] 256 / 5e-87 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10029745 [exp] 244 / 1e-77 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 231 / 2e-73 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10010999 [exp] 177 / 4e-56 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229600 [exp] 274 / 4e-94 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.006G121400 [exp] 262 / 3e-89 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.008G032000 [exp] 262 / 3e-89 AT5G03530 290 / 1e-100 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.016G097800 [exp] 257 / 2e-87 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.005G063500 [exp] 246 / 5e-83 AT1G43890 346 / 9e-123 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.007G105500 [exp] 244 / 4e-82 AT1G43890 343 / 1e-121 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.002G074400 [exp] 244 / 4e-82 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.004G226600 [exp] 169 / 6e-53 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.014G049400 [exp] 168 / 2e-52 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G081800 [exp] 168 / 2e-52 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10040423 pacid=23173818 polypeptide=Lus10040423 locus=Lus10040423.g ID=Lus10040423.BGIv1.0 annot-version=v1.0 ATGGCGACAACCGCTTATTTCAATTTCTCTTCTTTATCTCCTCCTTCAACTCCTTCTTCCAGAGGCCACACCTCCCACGATTACTCCTTCAAGATTCTCA TGGTCGGAGATTCCGCCGTCGGCAAGAGCAGTATTCTCCTCAGATTCATTTCCGATTCCGATCACCACCCTTCCCCCACTATCGGTGTGGACTTTAAGAT GAAGACAGTCATGGTCAATGACAAAAGATTGAAGCTTACGATTTGGGATACAGCTGGACAGGAGAGGTTTGGAGCGTTAACAACATCTTATTACAGAGGA GCACATGGCATCATACTAGTCTACGACATTACAAAGAGAGAGACATTCACCAGTTTGTCAGAAATGTGGGCAAGAGATGTGGAGCTTTATTCTACCAATC ATGACTGTGTCAAGCTTCTAGTTGGAAACAAAGTTGACCAGGTAAGTGAACGGGCTGTAAGCAGAGAAGAAGGTATGGCTCTAGCACAAGAGCTTAACTG TTCGTTTCTGGAATGTACTGCAAGATCTAGACAGAACGTGGAGCAAATCTTTAGAGTGCTCTTATCAAAGATATATGAAGTACCTACTCTACTGGAAAAG GGTTCCGGAGTCGTCAAGGCACCCACCATCCGGGCAGACAGACAAGCGTCCCAGCAAGGTGGCAGAAATCGTTGTTGCTCTTGA
AA sequence Show only first row Show all	>Lus10040423 pacid=23173818 polypeptide=Lus10040423 locus=Lus10040423.g ID=Lus10040423.BGIv1.0 annot-version=v1.0 MATTAYFNFSSLSPPSTPSSRGHTSHDYSFKILMVGDSAVGKSSILLRFISDSDHHPSPTIGVDFKMKTVMVNDKRLKLTIWDTAGQERFGALTTSYYRG AHGIILVYDITKRETFTSLSEMWARDVELYSTNHDCVKLLVGNKVDQVSERAVSREEGMALAQELNCSFLECTARSRQNVEQIFRVLLSKIYEVPTLLEK GSGVVKAPTIRADRQASQQGGRNRCCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	0	1
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	2.4	0.7805
AT5G35460			unknown protein		Lus10017161 [exp]	5.5	0.8067
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	6.0	0.7729
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10033120 [exp]	7.7	0.7253
AT1G68185			Ubiquitin-like superfamily pro...		Lus10000234 [exp]	8.7	0.6958
					Lus10008146 [exp]	10.2	0.7185
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	11.0	0.7631
AT1G60750			NAD(P)-linked oxidoreductase s...		Lus10041185 [exp]	13.9	0.7582
AT1G31940			unknown protein		Lus10010425 [exp]	20.5	0.7706
					Lus10021794 [exp]	21.2	0.6802

Compare expression of checked genes

Lus10040423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.