Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04390 135 / 1e-38 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 115 / 7e-31 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 97 / 8e-25 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 94 / 3e-23 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 80 / 4e-19 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G53600 78 / 3e-18 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G59820 72 / 4e-16 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT2G28710 72 / 5e-16 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46080 69 / 6e-15 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46090 65 / 2e-13 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023540 [exp] 278 / 2e-95 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10037942 [exp] 125 / 5e-34 AT5G04390 198 / 2e-59 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 100 / 3e-26 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 97 / 1e-24 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 91 / 5e-23 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10022610 [exp] 91 / 8e-23 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10024428 [exp] 83 / 5e-20 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040312 [exp] 79 / 3e-18 AT2G37430 112 / 8e-32 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10023433 [exp] 75 / 9e-17 AT2G28710 117 / 1e-33 C2H2-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032300 [exp] 131 / 1e-37 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 125 / 2e-35 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 113 / 4e-31 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 108 / 1e-28 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 105 / 2e-27 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 97 / 1e-24 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 91 / 3e-23 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 89 / 3e-22 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G209400 [exp] 86 / 3e-21 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 82 / 8e-20 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040425 pacid=23174050 polypeptide=Lus10040425 locus=Lus10040425.g ID=Lus10040425.BGIv1.0 annot-version=v1.0 ATGGCAAATTGTTTGATCCTACTTGCGCAGGGAAATTCTTCCTTCTTCACAAATAATCACATTAATGCCACAATTTCCTCGACCGTTAACAACAACAATA TCGCGAACGGAAAATTCACGAGCAGGAAATTCATGGAGACAAGCGGCGGGGTTGAAGGCGGCGGGAAAGTAGGGTACTATGTGTACGAGTGCAGGACATG CAACAGGACATTCCCGTCGTTTCAAGCATTAGGTGGACACCGTGCGAGCCACAAGAAGCCGAAGAACCTACTGGTCACTAATAATTTATTTTTAGCAACT GCCCCGCCGTACAATGATGTAACCAACTTCCTCCAACTGAGCAGCGGCAGAGGCCTCGTCGCTAATAATCACAAGGGGAACAACAACAGCTACAACCGGG TGCACGAGTGCGGACAATGCGGGGCGGAATTCAACTCAGGGCAAGCACTGGGAGGCCACATGAGGAGGCACAGAGCTCCTCCGCCAACCATCACGACAAA CCTGTCGTTGTTAGCAAGTAACAACGACCTGAGGACAACGTCGTAG
AA sequence Show only first row Show all	>Lus10040425 pacid=23174050 polypeptide=Lus10040425 locus=Lus10040425.g ID=Lus10040425.BGIv1.0 annot-version=v1.0 MANCLILLAQGNSSFFTNNHINATISSTVNNNNIANGKFTSRKFMETSGGVEGGGKVGYYVYECRTCNRTFPSFQALGGHRASHKKPKNLLVTNNLFLAT APPYNDVTNFLQLSSGRGLVANNHKGNNNSYNRVHECGQCGAEFNSGQALGGHMRRHRAPPPTITTNLSLLASNNDLRTTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040425 [exp]	0	1
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10031008 [exp]	1.0	0.8492
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	3.5	0.8001
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10013315 [exp]	3.9	0.7668
					Lus10010418 [exp]	6.5	0.8216
AT5G52975			Protein of unknown function (D...		Lus10032886 [exp]	9.2	0.7808
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032434 [exp]	9.4	0.7197
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	10.6	0.7225
					Lus10021684 [exp]	11.0	0.6721
AT3G22060			Receptor-like protein kinase-r...		Lus10012853 [exp]	15.0	0.6449
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018098 [exp]	16.2	0.7581

Compare expression of checked genes

Lus10040425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.