Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04310 335 / 1e-107 Pectin lyase-like superfamily protein (.1) AT3G54920 290 / 3e-90 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT3G07010 280 / 2e-87 Pectin lyase-like superfamily protein (.1) AT5G63180 275 / 1e-85 Pectin lyase-like superfamily protein (.1) AT4G13710 204 / 1e-58 Pectin lyase-like superfamily protein (.1.2) AT1G30350 195 / 3e-56 Pectin lyase-like superfamily protein (.1) AT3G53190 196 / 3e-55 Pectin lyase-like superfamily protein (.1) AT1G14420 182 / 2e-50 AT59 Pectate lyase family protein (.1) AT3G24230 181 / 4e-50 Pectate lyase family protein (.1) AT4G13210 175 / 1e-48 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023542 [exp] 299 / 8e-94 AT5G04310 579 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 275 / 6e-86 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037945 [exp] 236 / 2e-67 AT3G54920 599 / 0.0 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) Lus10030791 [exp] 225 / 1e-66 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10011258 [exp] 210 / 2e-61 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 209 / 7e-61 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10042509 [exp] 197 / 6e-59 AT4G13710 367 / 3e-127 Pectin lyase-like superfamily protein (.1.2) Lus10038157 [exp] 197 / 7e-56 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10023917 [exp] 194 / 2e-54 AT3G53190 696 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238800 [exp] 253 / 5e-77 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G229000 [exp] 216 / 2e-62 AT5G04310 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G032700 [exp] 205 / 1e-58 AT5G04310 556 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G148800 [exp] 201 / 1e-57 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.006G122000 [exp] 194 / 1e-54 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G339500 [exp] 189 / 1e-53 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 184 / 2e-51 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G008100 [exp] 182 / 4e-51 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.003G175900 [exp] 182 / 9e-51 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.004G007300 [exp] 179 / 7e-50 AT4G22080 489 / 1e-173 root hair specific 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10040426 pacid=23173860 polypeptide=Lus10040426 locus=Lus10040426.g ID=Lus10040426.BGIv1.0 annot-version=v1.0 ATGGAAGACACATTTCCTACCGAACACAAGGATCTAAGCAGGCAGCGATGGATCCAGGATGTGTCCGCTGCACAGAACCGTTCCCGTGATGTCTTCTTTA ATGAAGAAGAGGAACGGATGATCCGCTACAAAGTTTTTATAGTTTTTTCCACATCCACCAAGACTCGACATCTCCAACATAGCAACAGAAGCCGTTCCGG CTTCCCTCACTCTAATGCGACATCAAGCGAGACTTTGGGCAGATCGGAGGACGCAAAGTGTGGGTTTCTTACGGGAGTGACATGCGTATCCGGGTGGGAG AGAGAGCTCCACCGTCAGCAGCATAGATTGGTGCTTCAGGTGAAAAAAGAGACAGATGGAGATGGCGGAAAAACTTTTGAAGATGGAACTTCAACCATTC TTGAAGATGGAGATGGGGCTTGGATGGCGATTTCTAAGGCTGCATCCAGATGGTGCTTGCTGATTCCATCCGACGGCTGGCGGGATCTCGCGGCAGAGCG AGGAGCGGAGGTGGAGTGTCGGACCAAATTTATAAAAAGTATTAAAACCAACCAACCATCATATTCATATTCTCCCCCAAATTCAGGAGAGCAGAGAGCT CTGTTTTTCCCTCCCTTCATTTCCGTGGCTGCTTCTTCAAGAATGCTTCCTATTAGCTTCTGCATTCTCTTCCTCTCTTCGATCCTCCACTCAGTTTCCG ATTCCAAGTTCATCAATCTCACTCTCCCTCACCAGCACCCTTACCCAGACGATGTTGCTGACGATGTTCACAGACGGGTCAACGAGTCCCTATCGCGAAG GCTACTTCAGGCGGGGCCCACTTGCCAAACGGGCAACCCGATCGACGACTGCTGGCGGTGCGACCCGAACTGGCCCAACAACCCCCAACACCTCGCCGAT TGCTCAATCGGATTCGGCCGCGGCGCGTTGGGCGGACGCGGCGGACAAATCTACGTCGTCACCGACTCGTCCGACCACGACCCGTCATCCCCTACACCCG GAACCCTCCGCTACGGCGTGATCCAAGACGTCCCGCTATGGATCATCTTTGCCGCCGACATGACCATCTCCTTAAAACACGAGCTCATCTTCAACAGCTA CAAGACCGTCGACGGCCGAGGAGCCAATGTCCACATCACGGGGAACGGATGCCTGACTTTATGGATGCCTCACCTTACAGTACGTCAACCACGTGATCAT CCACAACCTGAGAATCTACGACTGCAAGCCGTCCGGGAATACCAACGTCGCCTCGTCGCCGACCCACGTTGGATTCAGGGGAAGATCCGACGGCGACGGG ATCTCCCTGTGACGATTGCGTTCAATAGATTTGGGGAAGAGCTAGTGCAGAGGATGCCGAGGTGTAGGCATGGGTATATACATGTGGTGAATAATGATTT CACTTACTGGAAAATGTATGCCATCGGCGGTAGCGCTAGTCCGACAATTAATAGCCAGGGGAATCGGTATGTCGCCCCGGTCGATCCCGATGCCAAAGAG GTGACAAAGAGGGTGGAGACGGACGAGAAAGAGTGGGAGAGGTGGAACTGGAGAACGGACGGAGACATAATGGTAAATGGAGCGTTTTTTGTACCGTCGG GAGCCGGGGTGAGTGCCACGTATGAAAGGGCAACCAGCTTGAATGCCATGTCAGCCACTCTTGTCGAACAGCTCACCTTGAACGCGGGCATCCTAGATGG CACTAGGAGCACAGGGGGGATGCCATCCAACCCTGGATTCAACGGAGGTGGGGCCGGTGGCACAACCTACACCGGCAGCTATGGGTCCCCCGGTGGTGAG GGTAGCAATGGCGGCGACGGTAATGTGTTTGGGATGATATTTGGGAGCGGGGCGGCGGATGCGGCGGCGCCGCCCACATCGTCGGTGGTTTTGTCCTTTT CAATTGTTATTATTATGATTTTGTATTGTGATACCACCATTAACGATGGGACTTCATTGTTCTTGTTCCCATTGTGTTCAGTATTGTTATAG
AA sequence Show only first row Show all	>Lus10040426 pacid=23173860 polypeptide=Lus10040426 locus=Lus10040426.g ID=Lus10040426.BGIv1.0 annot-version=v1.0 MEDTFPTEHKDLSRQRWIQDVSAAQNRSRDVFFNEEEERMIRYKVFIVFSTSTKTRHLQHSNRSRSGFPHSNATSSETLGRSEDAKCGFLTGVTCVSGWE RELHRQQHRLVLQVKKETDGDGGKTFEDGTSTILEDGDGAWMAISKAASRWCLLIPSDGWRDLAAERGAEVECRTKFIKSIKTNQPSYSYSPPNSGEQRA LFFPPFISVAASSRMLPISFCILFLSSILHSVSDSKFINLTLPHQHPYPDDVADDVHRRVNESLSRRLLQAGPTCQTGNPIDDCWRCDPNWPNNPQHLAD CSIGFGRGALGGRGGQIYVVTDSSDHDPSSPTPGTLRYGVIQDVPLWIIFAADMTISLKHELIFNSYKTVDGRGANVHITGNGCLTLWMPHLTVRQPRDH PQPENLRLQAVREYQRRLVADPRWIQGKIRRRRDLPVTIAFNRFGEELVQRMPRCRHGYIHVVNNDFTYWKMYAIGGSASPTINSQGNRYVAPVDPDAKE VTKRVETDEKEWERWNWRTDGDIMVNGAFFVPSGAGVSATYERATSLNAMSATLVEQLTLNAGILDGTRSTGGMPSNPGFNGGGAGGTTYTGSYGSPGGE GSNGGDGNVFGMIFGSGAADAAAPPTSSVVLSFSIVIIMILYCDTTINDGTSLFLFPLCSVLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04310			Pectin lyase-like superfamily ...		Lus10040426 [exp]	0	1
AT5G04310			Pectin lyase-like superfamily ...		Lus10023542 [exp]	1.0	0.8119
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10014442 [exp]	2.0	0.8032
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001628 [exp]	4.5	0.7754
AT4G21450			PapD-like superfamily protein ...		Lus10018534 [exp]	9.2	0.7804
AT2G27740			Family of unknown function (DU...		Lus10043372 [exp]	12.8	0.7545
AT5G63180			Pectin lyase-like superfamily ...		Lus10033037 [exp]	15.9	0.7532
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10036763 [exp]	17.7	0.7420
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	26.2	0.7495
AT2G44500			O-fucosyltransferase family pr...		Lus10003914 [exp]	28.1	0.7071
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10010152 [exp]	28.1	0.7427

Compare expression of checked genes

Lus10040426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.