Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01930 278 / 2e-93 BBR_BPC BPC1, BBR/BPC1, ATBPC1 basic pentacysteine1 (.1.2) AT1G14685 270 / 2e-90 BBR_BPC BBR/BPC2, ATBPC2, BPC2 basic pentacysteine 2 (.1.2.3) AT1G68120 257 / 1e-85 BBR_BPC BPC3, BBR/BPC3, ATBPC3 basic pentacysteine 3 (.1) AT2G35550 163 / 3e-49 BBR_BPC BPC7, BBR/BPC7, ATBPC7 basic pentacysteine 7 (.1.2.3.4) AT5G42520 149 / 4e-43 BBR_BPC BPC6, BBR/BPC6, ATBPC6 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) AT2G21240 144 / 5e-41 BBR_BPC BPC4, BBR/BPC4, ATBPC4 basic pentacysteine 4 (.1.2) AT4G38910 137 / 1e-38 BBR_BPC BPC5, BBR/BPC5, ATBPC5 basic pentacysteine 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023543 [exp] 562 / 0 AT2G01930 292 / 5e-99 basic pentacysteine1 (.1.2) Lus10012389 [exp] 149 / 9e-43 AT5G42520 432 / 1e-152 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10031078 [exp] 148 / 1e-42 AT2G21240 323 / 5e-111 basic pentacysteine 4 (.1.2) Lus10024313 [exp] 148 / 3e-42 AT5G42520 436 / 5e-154 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10035462 [exp] 149 / 3e-41 AT2G21240 325 / 2e-109 basic pentacysteine 4 (.1.2) Lus10018060 [exp] 140 / 2e-39 AT2G21240 355 / 1e-123 basic pentacysteine 4 (.1.2) Lus10042056 [exp] 140 / 2e-39 AT2G21240 350 / 1e-121 basic pentacysteine 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G101400 [exp] 358 / 5e-125 AT1G14685 300 / 1e-102 basic pentacysteine 2 (.1.2.3) Potri.008G140200 [exp] 346 / 2e-120 AT2G01930 296 / 1e-100 basic pentacysteine1 (.1.2) Potri.012G040600 [exp] 294 / 1e-99 AT2G01930 259 / 3e-86 basic pentacysteine1 (.1.2) Potri.015G032800 [exp] 280 / 2e-94 AT1G14685 268 / 9e-90 basic pentacysteine 2 (.1.2.3) Potri.015G032900 [exp] 278 / 2e-93 AT1G14685 259 / 3e-86 basic pentacysteine 2 (.1.2.3) Potri.012G040700 [exp] 266 / 1e-88 AT1G14685 247 / 1e-81 basic pentacysteine 2 (.1.2.3) Potri.012G040800 [exp] 192 / 1e-59 AT1G14685 190 / 3e-59 basic pentacysteine 2 (.1.2.3) Potri.001G133900 [exp] 161 / 2e-48 AT2G35550 199 / 3e-64 basic pentacysteine 7 (.1.2.3.4) Potri.002G026700 [exp] 152 / 7e-44 AT5G42520 439 / 2e-155 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.005G235900 [exp] 152 / 1e-43 AT5G42520 428 / 6e-151 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06217 [flax] [poplar] GAGA_bind GAGA binding protein-like family
Representative CDS sequence Show only first row Show all	>Lus10040427 pacid=23173830 polypeptide=Lus10040427 locus=Lus10040427.g ID=Lus10040427.BGIv1.0 annot-version=v1.0 ATGGACGATGATGCGTTGAACATGCGGAATTGGGGAGGGTACTATGAGCCGTCATTCAGGGGGCATCTAAGTCTGCAGCTGACTTCGAACATGACGGATC GGGACACGAAGCATTTCCTGCCGGGCCGAAATCAGAATAACATTATGCTTGATGTCAATGCGGGTGGTGGAGGATTCCATCCTCGTGATTTCATGCTCTC TGAATCCCATGTCCCCATTAACTACATGAGGGACAGTTGGATCAACCAGAGGGATAGCAATAAGTATCCGAATCTGTTGGCTCCGAACCCTAACTACACT CATGTTTTCCCGGAAACATCAGGAGCTCACTCTCTGCAAGTATTGCCTGCTCTTGATCCTTCCATGGGTGGAGGATCGAGAGATGATGGCAAAATGTGTA AAGTCGAAGAGCAAGTGTTTGATAAAGAACAGGAACATCAACCAACGAAGAAAAGGCAGGGGGGTGGGGTGATGAAAGCCCCCAAGGCGAAGAAACCGAG GAAGCCAAAGGACCCGAACAGCAATCCGGTCCAGCGTGCACCTAAGCCGCCAAAGAAGAGTATGGAGATGGTAATAAACGGGATCGATATGGACATATCG GGAATCCCTATCCCGGTCTGCTCTTGCACTGGAACTCCGCAGCAGTGTTATCGATGGGGGTGTGGTGGATGGCAGTCTGCTTGTTGTACTACTAATGTAT CGATGTATCCTTTGCCGATGAGCACCAAGAGACGTGGTGCGAGGATTGCGGGAAGGAAGATGAGCCAGGGTGCGTTCAAGAAGGTGCTGGAGAAACTTGC AGCTGAAGGGTACAACTTCAGTAACCCGATTGATTTGAGGACTCACTGGGCTAAGCATGGTACCAATAAGTTTGTTACTATTAGGTAG
AA sequence Show only first row Show all	>Lus10040427 pacid=23173830 polypeptide=Lus10040427 locus=Lus10040427.g ID=Lus10040427.BGIv1.0 annot-version=v1.0 MDDDALNMRNWGGYYEPSFRGHLSLQLTSNMTDRDTKHFLPGRNQNNIMLDVNAGGGGFHPRDFMLSESHVPINYMRDSWINQRDSNKYPNLLAPNPNYT HVFPETSGAHSLQVLPALDPSMGGGSRDDGKMCKVEEQVFDKEQEHQPTKKRQGGGVMKAPKAKKPRKPKDPNSNPVQRAPKPPKKSMEMVINGIDMDIS GIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFSNPIDLRTHWAKHGTNKFVTIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10040427 [exp]	0	1
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10023543 [exp]	1.0	0.9173
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	2.0	0.8511
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10017944 [exp]	4.5	0.8053
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023910 [exp]	6.3	0.7715
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	7.7	0.7943
AT3G09860			unknown protein		Lus10001400 [exp]	10.7	0.8133
AT5G14800		EMB2772, AT-P5C...	EMBRYO DEFECTIVE 2772, pyrroli...		Lus10019103 [exp]	15.1	0.7210
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	16.2	0.7805
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10042595 [exp]	16.9	0.7710
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10032539 [exp]	20.2	0.8077

Compare expression of checked genes

Lus10040427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.