Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75390 118 / 8e-34 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT4G34590 107 / 7e-30 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) AT2G18160 88 / 5e-22 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G62420 67 / 2e-14 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1) AT2G04038 44 / 9e-06 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT1G13600 44 / 9e-06 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT3G30530 43 / 3e-05 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G15830 42 / 5e-05 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT4G37730 42 / 7e-05 bZIP ATBZIP7 basic leucine-zipper 7 (.1) AT3G49760 41 / 7e-05 bZIP ATBZIP5 basic leucine-zipper 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024279 [exp] 120 / 5e-35 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 112 / 2e-31 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10041780 [exp] 99 / 2e-26 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10028333 [exp] 94 / 4e-24 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2) Lus10010005 [exp] 79 / 9e-19 AT3G62420 164 / 1e-52 basic region/leucine zipper motif 53 (.1) Lus10025024 [exp] 77 / 7e-18 AT3G62420 161 / 9e-52 basic region/leucine zipper motif 53 (.1) Lus10011722 [exp] 56 / 1e-09 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10011557 [exp] 48 / 3e-07 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10007726 [exp] 44 / 2e-05 AT3G49760 84 / 3e-21 basic leucine-zipper 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119700 [exp] 124 / 2e-36 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.004G158200 [exp] 121 / 2e-35 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.005G231300 [exp] 112 / 1e-31 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2) Potri.002G031900 [exp] 104 / 1e-28 AT1G75390 128 / 3e-38 basic leucine-zipper 44 (.1.2) Potri.007G019900 [exp] 98 / 5e-26 AT1G75390 130 / 5e-39 basic leucine-zipper 44 (.1.2) Potri.005G119300 [exp] 94 / 1e-24 AT2G18160 130 / 3e-39 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) Potri.014G120800 [exp] 78 / 1e-18 AT3G62420 161 / 8e-52 basic region/leucine zipper motif 53 (.1) Potri.002G196200 [exp] 76 / 8e-18 AT3G62420 182 / 3e-60 basic region/leucine zipper motif 53 (.1) Potri.007G006900 [exp] 59 / 9e-11 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.014G007100 [exp] 55 / 2e-09 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10040428 pacid=23174096 polypeptide=Lus10040428 locus=Lus10040428.g ID=Lus10040428.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCGAGCGGCACATCGTCGGCGACGTCGTCGCCGGTGAGCAACAACTCGGCCGGGTCGGACTCGGACCTCCAGGCTTTGATGGATGAGAGGA AGAGGAAGAGGATGGTGTCGAACAGGGAGTCGGCGAGGAGGTCGAGGATGAGGAAGCAGAAGAGGATGCGAAAGCAGAAACACCTCGACGATCTGACGGC CCAGGTTGATCAGCTCAGGAAAGAGAACGGCCAGATTGTCGCCAGCATCAGCGTCACCACCCAGCATTTCCTGTCCCTCGACGCAGACAATTCGGTACTG AGGGCTCAGGTAGGCGAGCTCGGCAACCGCCTCGATTCCCTCAACGAGATCCTCCAGTTCCTCACTCCGGCCGCTGATGCAGTCGGCGGCTGCGGCGGTG GAGGAGGGTTTGGGTATGAGTATGACATGGCTGGAATGATGGCGGAGCATCACGGCGGCTGCTTTTGGAGTCCGGTGAACTCGGCGGTGATGAATCAGGC CATGAGTATGGAATCTGCGGCGGCGGCGGATGTGTTCCTGGTGAATTAA
AA sequence Show only first row Show all	>Lus10040428 pacid=23174096 polypeptide=Lus10040428 locus=Lus10040428.g ID=Lus10040428.BGIv1.0 annot-version=v1.0 MASSSGTSSATSSPVSNNSAGSDSDLQALMDERKRKRMVSNRESARRSRMRKQKRMRKQKHLDDLTAQVDQLRKENGQIVASISVTTQHFLSLDADNSVL RAQVGELGNRLDSLNEILQFLTPAADAVGGCGGGGGFGYEYDMAGMMAEHHGGCFWSPVNSAVMNQAMSMESAAAADVFLVN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10040428 [exp]	0	1
AT1G65720			unknown protein		Lus10031363 [exp]	1.0	0.9504
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031743 [exp]	3.2	0.9342
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10007905 [exp]	3.5	0.9451
AT5G03080			Phosphatidic acid phosphatase ...		Lus10019919 [exp]	4.0	0.9343
AT5G67020			unknown protein		Lus10019344 [exp]	4.0	0.9455
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10020696 [exp]	5.1	0.9064
AT5G03080			Phosphatidic acid phosphatase ...		Lus10026489 [exp]	5.5	0.9268
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025818 [exp]	6.0	0.9304
AT3G52105			unknown protein		Lus10012208 [exp]	6.8	0.9073
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10007976 [exp]	7.4	0.9265

Compare expression of checked genes

Lus10040428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.