Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36310 375 / 2e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023545 [exp] 507 / 0 AT1G36310 450 / 5e-159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020005 [exp] 43 / 0.0002 AT5G57280 327 / 2e-113 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G091300 [exp] 293 / 2e-96 AT1G36310 431 / 1e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10040430 pacid=23173987 polypeptide=Lus10040430 locus=Lus10040430.g ID=Lus10040430.BGIv1.0 annot-version=v1.0 ATGAAGGAAATCAAGGTGACTAGCTCTGCCGCCAGCTTCTGCTCCAATGCTGAAGATCACCAGGCAGCTTCATGTATCGGCTCGACCCCGGAGATCGAAA AGAAGTATGTGCACCGAGTTTACGACGCTATTGCCCCTCATTTCAGCTCCACGAGGTTTGCGAAATGGCAGAAGGTGGCGTCTTTCCTTAACAATTTGCC TGTCGGATCGCTCGTGCTCGATGCAGGGTGCGGGAATGGGAAGTATCTAGGGTTGAATCAGGATTGCTGTTTCATCGGGTGCGATATCAGCGTCCCGCTG ATCAAGATTTGTGTGGATCGAGGGAGCGAGGTTCTGGTTGCGGATGCTGTGAATCTTCCTTACCGAGACGGGTTTGGCGATGCTGCGATTTCGATTGCGG TGCTGCATCATTTGAGCACCGAGGTCAGGAGGAAGAAGGCGGTGGAGGAGTTGGTTAGGGTTGTGAAGAAGGGTGGACTTGTGTTGATAACTGTCTGGGC TGCCGAGCAAGAGGATCGGTCACTGCTTACGAAGTGGACGCCTCTTAATGATAAGTATGTCGAGGAATGGATCGGACCGGGGAGTCCTCGAGTTCGGAGC CCTTCATCCGCGACTTTGAAAAGCATCCCCGAATCAGCGGAAGGGAAGGAAATGCACGATGAGAGGACTTTGAAAAGCATCCCGGAGTCAGGTGGAAGTA GTGTAGATGATGATGTGGTTTCGAGAGAGGATGAAAGTCAGCACGAGTATTTTGTGCCTTGGCATCTGCCGTATCATCGAGCTGAAGTTGGCAGGGCTTC TGCATCTGCTGTGGCCTCCGGCTTGGCGAGGAAAGATGACAAGAAGGGTGCGGTTGTCTACAACCGTTACTATCACGTCTTTAGCGAAGGAGAACTCGAA AGGTTGACATCTGGTATCAAGAATGCAGTCATAGTCGATCAGTTCTTCGACAAATCGAATTGGTGCATTGTTCTCCAGAAAATCACGTGA
AA sequence Show only first row Show all	>Lus10040430 pacid=23173987 polypeptide=Lus10040430 locus=Lus10040430.g ID=Lus10040430.BGIv1.0 annot-version=v1.0 MKEIKVTSSAASFCSNAEDHQAASCIGSTPEIEKKYVHRVYDAIAPHFSSTRFAKWQKVASFLNNLPVGSLVLDAGCGNGKYLGLNQDCCFIGCDISVPL IKICVDRGSEVLVADAVNLPYRDGFGDAAISIAVLHHLSTEVRRKKAVEELVRVVKKGGLVLITVWAAEQEDRSLLTKWTPLNDKYVEEWIGPGSPRVRS PSSATLKSIPESAEGKEMHDERTLKSIPESGGSSVDDDVVSREDESQHEYFVPWHLPYHRAEVGRASASAVASGLARKDDKKGAVVYNRYYHVFSEGELE RLTSGIKNAVIVDQFFDKSNWCIVLQKIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	0	1
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	1.7	0.9319
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10041491 [exp]	3.0	0.9248
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	5.7	0.9222
AT2G01100			unknown protein		Lus10025460 [exp]	6.3	0.9179
AT2G28430			unknown protein		Lus10021477 [exp]	6.5	0.9215
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	6.9	0.9265
AT1G64385			unknown protein		Lus10033958 [exp]	8.7	0.9067
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10023494 [exp]	9.5	0.9203
AT1G48160			signal recognition particle 19...		Lus10011152 [exp]	13.0	0.9027
AT1G72510			Protein of unknown function (D...		Lus10008118 [exp]	19.7	0.8740

Compare expression of checked genes

Lus10040430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.