Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21520 791 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 780 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 586 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 555 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 544 / 0 ATSFH12 SEC14-like 12 (.1) AT2G21540 529 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT4G34580 517 / 3e-178 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G18180 479 / 1e-163 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 473 / 7e-161 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 441 / 7e-149 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023546 [exp] 1083 / 0 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 923 / 0 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 905 / 0 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10025988 [exp] 532 / 0 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 521 / 5e-180 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040432 [exp] 520 / 1e-178 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 511 / 1e-175 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10028332 [exp] 510 / 4e-175 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10024276 [exp] 486 / 4e-165 AT2G21520 602 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119500 [exp] 857 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 831 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 665 / 0 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 657 / 0 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G119700 [exp] 572 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.009G119400 [exp] 560 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 556 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.007G020300 [exp] 553 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.002G243000 [exp] 405 / 2e-133 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.011G168300 [exp] 386 / 2e-126 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10040431 pacid=23173844 polypeptide=Lus10040431 locus=Lus10040431.g ID=Lus10040431.BGIv1.0 annot-version=v1.0 ATGTCTGGTCCGCTCGATCGGTTCGCTAGGCCTTGTTTTGAGGGTTCATCAGGGGGAGATGAAAGGAGGGAGGAGAGGAGGGAGGAGAGGAGGGAGAGGA GATCCGATTTTGAGAACTCCGAGGACGAGAGAAGGACAAGGATTGGGTCGCTGAAGAAGAAGGCGATTAATGCTTCTACCAAGTTCAAGCATTCTCTGAA GAAGAAGAGCAGCAGCAGGCGAAAGAGTGATGGCCGGGTTAGCTCAGTTTCCATCGAAGACATACGGGACCTCGAGGAACTGCAGGCTGTCGATGCATTT CGCCAGTCATTGATCATGGACGAGTTGCTTCCTGAAAGACACGACGACTACTACATGATGTTGAGGTTCTTGAAAGCTAGGAAATTCGACCTTGAGAAAG CAAAGCATATGTGGGCTGATATGCTTCAATGGAGGAAGGAATTTGGTACTGATACTATCATGGAGGAGTTTGAGTTTCAAGAATTAGACGAAGTTTTGAA GTATTACCCACATTTCTATCATGGCGTGGACAAAGAAGGGAGACCTATTTACATTGAAAGATTGGGGAAAGTTGATCCTCACAAACTTATGCAAGTAACA GATCTCGACCGCTATGTGAAATACCATGTCCGTGAGTTTGAGAAAAGCTTTTTGGTCAAGTTTCCAGCTTGTAGCATTGCTGCAAGGAAGCATATTGACT CTAGCACAACAATTCTAGATGTTCAAGGAGTGGGATTAAAAAACTTCACGAAATCTGCTCGTGAACTTGTCATGCGGCTGCAGAAGATTGACGGTGACAA CTACCCCGAGACTCTACACGAAATGTACATTATCAATGCTGGGCCTGGATTTAGGCTTTTGTGGGGTACCATCAAGTCATTTTTGGATCCAAGAACCAGC TCCAAGATTCATGTGCTTGGAAACAAGTATCAGAGTAAATTGCTCGAGGTAATTGATGCTAGTGAATTACCCGAATTCATGGGTGGTGTCTGTAAGTGTG CTGATCAGGGAGGTTGTCTTCGCTCTGACAAAGGACCATGGAGAAATCCAGATCTATTGAAGATTGTTCTAAGTGGTGGAGCTCGTCGCTCAAGGCAGGT TGTAAAGATCTTAAACAATGAGGGTAAGGTCATTACCTATGCAAAGCCTCCTTGTTACCCAATGGTCAGAAGTGATTCCTCTGCTGCTGAATCTGGTTCA GAAGCTGAAGAGATTTCTTCCCCCAAGGCACTAAGGTCTTACTCGCATCTGCGCTTGACTCCTGTTCGTGAAGAATCTAAGATTGTTGGGAAGGTGAATC ACCCTAGCACCTTTTCTGGGTATGATGAATACGTTCCGATGGTCGATAAAGCAGTTGACTCTACCTGGAATAAGCAAGCAGCCATTCAGAAGCTTGCAAT GTCTAAAGCTTCTACCGCAGCATCGGCAACTGTTCCGGAGACTCCAAAGACTTCAGCTGCTATCCACGTTAGGCTTTGTTTGGCAGTTCTGGCTTTCTTC ATGATGATTCTTACTTTCATCCGTTCGTTGCCATCGCGGTTGAGCAAAGAGGGTACTTCAGCTGGATTAACCTTAAACACTCCAGAGAAAGAGCTGACAC ACCCACCTTTGCCAACTCCAGCTTACTCGGAGACCGACCTGCTCACTTCTGTACTGAAAAGGCTGGGTGAACTCGAGGAGAAAGTCGACACGCTTCAATC AAAGCCATCGGAGATGCCGTACGAGAAAGAGGAGTTGCTAAATGCTGCTGTTTGCCGTGTTGATGCCTTGGAAGCTGAACTCATTGCAACTAAAAAGGCC CTACACGAAGCACTTATGAGACAGGAAGAACTGCTTGCTTACATCGATAGTCAAGAGGAAGCAAAAAACAGGGTATAA
AA sequence Show only first row Show all	>Lus10040431 pacid=23173844 polypeptide=Lus10040431 locus=Lus10040431.g ID=Lus10040431.BGIv1.0 annot-version=v1.0 MSGPLDRFARPCFEGSSGGDERREERREERRERRSDFENSEDERRTRIGSLKKKAINASTKFKHSLKKKSSSRRKSDGRVSSVSIEDIRDLEELQAVDAF RQSLIMDELLPERHDDYYMMLRFLKARKFDLEKAKHMWADMLQWRKEFGTDTIMEEFEFQELDEVLKYYPHFYHGVDKEGRPIYIERLGKVDPHKLMQVT DLDRYVKYHVREFEKSFLVKFPACSIAARKHIDSSTTILDVQGVGLKNFTKSARELVMRLQKIDGDNYPETLHEMYIINAGPGFRLLWGTIKSFLDPRTS SKIHVLGNKYQSKLLEVIDASELPEFMGGVCKCADQGGCLRSDKGPWRNPDLLKIVLSGGARRSRQVVKILNNEGKVITYAKPPCYPMVRSDSSAAESGS EAEEISSPKALRSYSHLRLTPVREESKIVGKVNHPSTFSGYDEYVPMVDKAVDSTWNKQAAIQKLAMSKASTAASATVPETPKTSAAIHVRLCLAVLAFF MMILTFIRSLPSRLSKEGTSAGLTLNTPEKELTHPPLPTPAYSETDLLTSVLKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKA LHEALMRQEELLAYIDSQEEAKNRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10040431 [exp]	0	1
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	2.0	0.9353
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10023546 [exp]	3.7	0.8887
AT1G35220			unknown protein		Lus10036488 [exp]	4.5	0.8798
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	4.9	0.9151
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028725 [exp]	7.9	0.8815
AT4G01400			unknown protein		Lus10002677 [exp]	8.9	0.8914
AT4G38500			Protein of unknown function (D...		Lus10024001 [exp]	9.5	0.8688
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10006396 [exp]	9.8	0.8848
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	9.8	0.8920
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	9.9	0.8938

Compare expression of checked genes

Lus10040431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.