Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21540 624 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT2G18180 583 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 579 / 0 ATSFH12 SEC14-like 12 (.1) AT4G34580 576 / 0 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 576 / 0 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 524 / 3e-180 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 514 / 6e-176 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 493 / 2e-168 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 469 / 6e-160 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75370 458 / 2e-154 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023547 [exp] 1053 / 0 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10042303 [exp] 771 / 0 AT2G21540 598 / 0.0 SEC14-like 3 (.1.2.3) Lus10026355 [exp] 753 / 0 AT2G21540 583 / 0.0 SEC14-like 3 (.1.2.3) Lus10025988 [exp] 565 / 0 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 543 / 0 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040431 [exp] 532 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10041779 [exp] 530 / 0 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10042302 [exp] 525 / 5e-180 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 519 / 2e-177 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G157600 [exp] 702 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.009G119400 [exp] 699 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.007G020300 [exp] 595 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.005G119700 [exp] 593 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.004G157700 [exp] 529 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 528 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 496 / 2e-169 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 458 / 3e-154 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 400 / 1e-131 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.011G168300 [exp] 364 / 5e-118 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10040432 pacid=23174216 polypeptide=Lus10040432 locus=Lus10040432.g ID=Lus10040432.BGIv1.0 annot-version=v1.0 ATGGCTGATGCAATGTCTATAGTCCTTCCGGACAAAAATCCTAAACTAGGAGGACCTGAGAATCAAGAGTTCTCGGAGGATGAGAAGAAGAAGAAGTCAT TCAAGAAGAAGGCAATCAATGCCTCCAACAAGTTCAGGAGCTCCCTGACCAAGAAAGGCCGCAGGAACAGCAGGGTAATGTCGGTCTCGATTGTCGACGA AATCGACTTGGAGGAGCTCAGGGCTGTGGATGCATTCAGGCAGGCTCTCATCCTTGATGAGCTTCTTCCTTCCAATCATGATGACCATCACATGATGCTC AGGTTCCTCAAGGCCAGGAAGTTTGACATTGACAAGGCCAAACAGATGTGGGGGGATATGATCCAGTGGAGAAAGGAGTTTGGTACTGATGCAATCATGG AGGACTTTGAGTTCAAGGAAGTAGATGAAGTCCTGCAGTACTATCCACAAGGGTACCATGGAGTAGACAAAGATGGGAGGCCAGTCTACATCGAGAAGCT CGGCGAAGTTGATGCCAACAAGCTGGTTCAGGTCACGTCGTTGGATCGATATGTGAAGTACCATGTTCAGGAGTTTGAGAAGGCTTTCACTTACAAGTTC CCATCTTGCTCCATTGCTGCTAAGAAGCACATTGACCAGAGCACTACCATCATTGATGTCCAAGGAGTGGGTCTGAAGCAGTTCACCAAAACTGCCAGGG AACTCATCAGCCGGATCCAGAAGATCGATGGCGATAACTACCCTGAGACATTGAACAGGATGTTCATCATCAATGGTGGTGCTGGATTCAGGCTACTGTG GAACACTGTTAAGCAGTTCCTGGACCCCAAGACTGCTTCCAAGATCCATGTTCTTGGCAGTAAATACCAGAGCAAGTTGCTTGAAGTAATTGATGCCAGC GAGCTTCCGTCGTTCTTCGGAGGGACTTGCAACTGTGCTGACAAGGGTGGCTGCATGCGCTCCAGCAAAGGCCCTTGGAATGATCCTGACATCCTGAAGA TGGTTGAAAATGGAGAGGGTAAATGCCACAGGAGAGCCCTATCAGGAATTGAGGAGAAGCAAATTCCTGAAGACAAGGAAACCATCAAGTTTTCGAACGA GGAAGTACTTCAGGACCTGAAACCTTCTCCCGTTCCTGAAGAAGAAGTAATTCACCATCTTCCGATCATAACCGTAAACAAGCTCACCACTGACAACTAC GAGAAGTCCATCCAAGTCGTGGAGAAGACCATCCACACCGACTGGAGAGCTTCTCTAGGAAAGGCTGTAGAAGAGGATGCTCTTGTGCCCGCAAATGGGA AGCAGGTGATGGGCGGGATCATGGCAGTTGTGATGGGGGTAGTGACCTTGATCAAGATGACCAAGACAATGCCTCGAAAGCTGACTGAGGCCGCAATCTA TGGGAGCAAGACTTACTACTCCGAATCTCTCAACGACCATCCTTCTTCTGCTGGCAGGATGGAGGGATCCTCCATCTCCACCTCGGATTACAAGAACATG ATGCTGAGGATGGCCGAGGTCGAAGAGAAGCTGAACGCCCTATGCTCGAAACCCGAAGTGATGCCTGCTGAGAAGGAGGCAATGCTCATGAACGCACTCG GTCGTGCTGAAGCCCTCGAGAAGGAGCTCTCTTCTGCAAAGATCTTACTTGTGGAAGCTGTAGGGAAACAGCAAGAACTCCTGGCTTACATTGACAAGAA GAACAAGAAGAAGAAGAGGGTAAAAATGTTTTCTTTTCCATCCCTGATCATGAACTCAGGAACCGTTTATATCAAAGCTGCTAACTTTTCTGGTTTCTCT GTTTCGGAATGCAGTTCTTCAGATTCTAGAGGAAATGGTTCATCTTATGACAACTTGACAAAGGCCAATTGA
AA sequence Show only first row Show all	>Lus10040432 pacid=23174216 polypeptide=Lus10040432 locus=Lus10040432.g ID=Lus10040432.BGIv1.0 annot-version=v1.0 MADAMSIVLPDKNPKLGGPENQEFSEDEKKKKSFKKKAINASNKFRSSLTKKGRRNSRVMSVSIVDEIDLEELRAVDAFRQALILDELLPSNHDDHHMML RFLKARKFDIDKAKQMWGDMIQWRKEFGTDAIMEDFEFKEVDEVLQYYPQGYHGVDKDGRPVYIEKLGEVDANKLVQVTSLDRYVKYHVQEFEKAFTYKF PSCSIAAKKHIDQSTTIIDVQGVGLKQFTKTARELISRIQKIDGDNYPETLNRMFIINGGAGFRLLWNTVKQFLDPKTASKIHVLGSKYQSKLLEVIDAS ELPSFFGGTCNCADKGGCMRSSKGPWNDPDILKMVENGEGKCHRRALSGIEEKQIPEDKETIKFSNEEVLQDLKPSPVPEEEVIHHLPIITVNKLTTDNY EKSIQVVEKTIHTDWRASLGKAVEEDALVPANGKQVMGGIMAVVMGVVTLIKMTKTMPRKLTEAAIYGSKTYYSESLNDHPSSAGRMEGSSISTSDYKNM MLRMAEVEEKLNALCSKPEVMPAEKEAMLMNALGRAEALEKELSSAKILLVEAVGKQQELLAYIDKKNKKKKRVKMFSFPSLIMNSGTVYIKAANFSGFS VSECSSSDSRGNGSSYDNLTKAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10040432 [exp]	0	1
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	4.0	1.0000
					Lus10012669 [exp]	6.7	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	6.9	1.0000
					Lus10013504 [exp]	7.1	1.0000
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	7.7	1.0000
					Lus10033834 [exp]	7.7	1.0000
AT2G18560			UDP-Glycosyltransferase superf...		Lus10008248 [exp]	7.9	1.0000
					Lus10006296 [exp]	8.2	1.0000
AT3G44460	bZIP	DPBF2, ATBZIP67	basic leucine zipper transcrip...		Lus10019542 [exp]	9.2	1.0000
					Lus10032814 [exp]	9.7	1.0000

Compare expression of checked genes

Lus10040432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.