Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11880 813 / 0 Pyridoxal-dependent decarboxylase family protein (.1) AT3G14390 805 / 0 Pyridoxal-dependent decarboxylase family protein (.1) AT4G34710 48 / 2e-05 SPE2, ADC2, ATADC2 arginine decarboxylase 2 (.1.2) AT2G16500 46 / 5e-05 SPE1, ARGDC1, ADC1 arginine decarboxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023548 [exp] 993 / 0 AT5G11880 809 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10042305 [exp] 870 / 0 AT5G11880 806 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10026354 [exp] 216 / 5e-69 AT5G11880 210 / 2e-67 Pyridoxal-dependent decarboxylase family protein (.1) Lus10004154 [exp] 49 / 5e-06 AT5G11880 53 / 2e-07 Pyridoxal-dependent decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119300 [exp] 840 / 0 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Potri.004G157500 [exp] 828 / 0 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Potri.005G246300 [exp] 61 / 7e-10 AT3G14390 58 / 6e-09 Pyridoxal-dependent decarboxylase family protein (.1) Potri.002G015800 [exp] 52 / 6e-07 AT5G11880 54 / 1e-07 Pyridoxal-dependent decarboxylase family protein (.1) Potri.004G163300 [exp] 45 / 0.0002 AT4G34710 988 / 0.0 arginine decarboxylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00278 [flax] [poplar] Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain CL0036 [flax] [poplar] TIM_barrel PF02784 [flax] [poplar] Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Representative CDS sequence Show only first row Show all	>Lus10040433 pacid=23174123 polypeptide=Lus10040433 locus=Lus10040433.g ID=Lus10040433.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCTACCCACTTCTCCCAGCCGTTAGCTTCATCAAGAACCCTAACTCAATCCCGCGCTCGAAACCTATATTCAAAAGCCTTTTCCTTATCCA CTCCAAATTACTCTTCCAGACAATCCTTAGCTCTTCGTGCAGTTCTCTCGCAAAACCCTACCAAAACCTCTCCTCCACCGAAACACGACAACCAATTCGA GCATTGTTTCTCCAAATCATCCGATGGATTTCTCTACTGCGAGAGCGTCAAGGTGCAGGATGTCATGGACACTGTTGAGAGGCGGCCGTTCTACCTGTAC AGCAAGCCTCAGATCACTAGGAATGTTGAGGCCTACAAGGATGCTTTGGAAGGATTGAATTCAGTAATTGGATATGCTATCAAGGCTAATAATAACTTGA AGATTTTGGAGCATCTGAGAAAGTTGGGATGTGGGGCTGTTCTGGTCAGTGGGAATGAGCTCAGATTGGCTCTCAAGGCTGGGTTTGATCCCACAAAGTG TATATTTAATGGAAATGGGAAGCTGTTGGAGGATTTGGTTCTGGCTGCTGAAGCAGGAGTCTTTGTTAATGTGGATAGTGAATTTGATTTGGAAAATATT GTGGCAGCTTCTAGGGTTGCTGGCAAGAAGGTTAATGTTTTGCTTCGGATCAATCCTGATGTGGATCCTCAGGTCCACCCTTATGTAGCAACCGGGAACA AGAACTCGAAGTTTGGTATTAGGAATGAGAAGCTGCAGTGGTTTCTGGATGCTGTAAAGGCACATCCGAATGAGCTGAAGCTTGTTGGTGCTCACTGCCA TCTCGGATCAACGATTACCAAGGTGGACATATTTAGGGATGCTGCCGGTCTTATGGTAAACTACATTGACGAAATCCGTGCTCAAGGCTTTGAAGTCGAT TACTTAAACATTGGAGGTGGTTTGGGGATAGATTACCATCACTCTGGTGCTGTCCTGCCCAAGCCAAGGGATCTCATCGACACTGTTCGTGAAGTGGTGC TCTCTCGGAATCTCAATCTCATTATTGAACCAGGGAGATCCCTCATCGCCAACACCTGCTGCTTCGTAAATAGGGTTACTGGCGTAAAGACGAATGGCAC TAAAAATTTTGTCGTGATTGATGGTAGCATGGCTGAGCTCATCCGTCCTAGTCTATATGATGCTTATCAACACATAGAGCTAGTTTCTCCTACCCCACCG GATGCCGAGGTGTCAATCTTTGACATTGTTGGTCCCGTGTGCGAGTCGGCTGATTTTCTGGGAAAGGAGAGGGAACTTCCTACTCCACCCAAGGGAACCG GTTTGGTGGTTCATGATGCTGGAGCTTACTGCATGAGCATGGCATCAACTTACAACCTCAAGATGCGCCCTCCCGAGTATTGGGTTGAGGATGATGGGTC GATAGCCAAGATTCGACATGCAGAGACGTTCGAAGACCATATCCGGTTCTTCGATGGCCTGTAA
AA sequence Show only first row Show all	>Lus10040433 pacid=23174123 polypeptide=Lus10040433 locus=Lus10040433.g ID=Lus10040433.BGIv1.0 annot-version=v1.0 MASSTHFSQPLASSRTLTQSRARNLYSKAFSLSTPNYSSRQSLALRAVLSQNPTKTSPPPKHDNQFEHCFSKSSDGFLYCESVKVQDVMDTVERRPFYLY SKPQITRNVEAYKDALEGLNSVIGYAIKANNNLKILEHLRKLGCGAVLVSGNELRLALKAGFDPTKCIFNGNGKLLEDLVLAAEAGVFVNVDSEFDLENI VAASRVAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAGLMVNYIDEIRAQGFEVD YLNIGGGLGIDYHHSGAVLPKPRDLIDTVREVVLSRNLNLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFVVIDGSMAELIRPSLYDAYQHIELVSPTPP DAEVSIFDIVGPVCESADFLGKERELPTPPKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSIAKIRHAETFEDHIRFFDGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	0	1
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	2.6	0.9543
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	3.5	0.9339
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10039874 [exp]	4.2	0.9531
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	4.7	0.9359
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10042588 [exp]	6.5	0.9289
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	6.9	0.9537
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10038908 [exp]	10.5	0.9425
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	11.0	0.9176
AT4G09730		RH39	RH39 (.1)		Lus10017781 [exp]	12.5	0.9179
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	13.0	0.9238

Compare expression of checked genes

Lus10040433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.