Plant FIBer expression Database

Lus10040434 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16370 788 / 0 THY-1 thymidylate synthase 1 (.1)
AT4G34570 755 / 0 THY-2 thymidylate synthase 2 (.1)
AT2G21550 524 / 0 Bifunctional dihydrofolate reductase/thymidylate synthase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023550
[exp]
203 / 4e-63 AT4G34570 183 / 1e-55 thymidylate synthase 2 (.1)
Lus10023549
[exp]
156 / 9e-46 AT2G16370 131 / 2e-37 thymidylate synthase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G157400
[exp]
857 / 0 AT2G16370 870 / 0.0 thymidylate synthase 1 (.1)
Potri.009G119200
[exp]
833 / 0 AT2G16370 845 / 0.0 thymidylate synthase 1 (.1)
Potri.005G230400
[exp]
311 / 3e-103 AT2G16370 303 / 2e-100 thymidylate synthase 1 (.1)
Potri.005G230700
[exp]
310 / 7e-103 AT2G16370 299 / 8e-99 thymidylate synthase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00303 Thymidylat_synt Thymidylate synthase
CL0387 DHFred PF00186 DHFR_1 Dihydrofolate reductase
Representative CDS sequence
>Lus10040434 pacid=23174010 polypeptide=Lus10040434 locus=Lus10040434.g ID=Lus10040434.BGIv1.0 annot-version=v1.0
ATGAGTGGTAGTTCGGTGGCAAGTTCTATAGCAAGCCTTTCCAATGGCGGGGGGGGGGGGGGGCCAGATCCACAGAGGACTTACCAGGTTGTCGTGGCTG
CAACCAAAGATTGGGGTATTGGGAAAGATGGGAAGTTGCCTTGGAAGTTGCCTTCTGATCTCAAGTTCTTTAAAGATGTTACCTTGACGACTTCGGATTC
TGGGAAGAAGAATGCAGTGATCATGGGTAGGAAGACATGGGAGAGCATCCCGCTTCAGCACCGTCCTCTCCCTGGACGTCTGAACGTTGTTCTCACTCGA
TCGGGGAGCTTCAATATCGCTACTGCGGAGAATGTTGTGATATGCGGCAGCATGCGTTCTGCTTTAGAGTTGTTGGCTGCGTCTCCTTATTGTTTATCTA
TTGAGAAGGTCTTTGTGATTGGAGGTGGCCAGATATTGAGGGAATCTCTTAATGCAGCTAAGTGTGATGCTATCCACTTGACGGAGATTGAGACGAGCTT
TGAATGCGATACCTTCATTCCTGCGATTGATTGCTCGGTATTTCAGCCTTGGTTTTTGTCTCCTCGAGTTGTGGAGAATGGCGTCCGGTTTTGTTTTACT
ACGTATGTACGAGTGAGGAGTTCAGTTGTTGAGTCCGAGAGCGGGTGTGATGATAAGATATCAAGTAACAGCTGCGAAAACAGTAAGTTTGAGATTAAGA
ACTTCTCTTTCCTTCCCAAGACGCTTTTTGAGAAACACGAGGAGTTCTTGTACTTGAGAATGGTTCAGGACATCTTGTCAAGTGGCAACTCTAAGGATGA
CAGGACCCAAACTGGTACTTTATCTAAATTTGGCTGCCAGAGAGTGTTTTGGAGAGGTGTTCTTGAAGAACTTCTTTGGTTCATCAGTGGATCAACTAAT
GCCAAGGTGCTTCAGGAGAAGGGAATCCATATATGGGATGACAATGCATCAAGAGATTACCTTGATAGGCAAGATTTCGTTTTCACCTTAATTGGATTGA
AGGATAGAGAGGAAGGGGATTTGGGGCCTGTATATGGGTTCCAATGGAGGCACTTCGGTGCCAGGTATACTAACATGCATGCTGACTACACTGGGCAAGG
ATTCGATCAGTTGGCCGATGTTATCACCAAGATCAAGAATAACCCGGATGACCGTCGTATTATACTCTCAGCTTGGAATCCTGCTGATCTGAAACTTATG
GCGCTTCCTCCTTGCCATATGTTTGCTCAGTTTTACGTGGCGAATGGGGAGCTGTCGTGTCAAATGTATCAGCGGTCCGCTGATATGGGCCTCGGTGTGC
CTTTCAACATTGCTTCTTATGCACTCCTGACTTACATGATTGCTCATGTTTGTGATCTTGTCCCTGGAGATTTCACTCATGTAATCGGCGATGCTCACAT
ATATCTAACTCATGTTAGGCCTCTGGAGGAGCAGCTTAAGAAATCACCGAAGCCTTTCCCGATTTTAAAGATCAATCCAGAGAAGAAAGACATAGATTCC
TTTTCAGCAGCCGATTTCAAGCTAATAGGCTATGACCCAGAACAGAAGATCGAAATGAAGATGGCAGTTTAA
AA sequence
>Lus10040434 pacid=23174010 polypeptide=Lus10040434 locus=Lus10040434.g ID=Lus10040434.BGIv1.0 annot-version=v1.0
MSGSSVASSIASLSNGGGGGGPDPQRTYQVVVAATKDWGIGKDGKLPWKLPSDLKFFKDVTLTTSDSGKKNAVIMGRKTWESIPLQHRPLPGRLNVVLTR
SGSFNIATAENVVICGSMRSALELLAASPYCLSIEKVFVIGGGQILRESLNAAKCDAIHLTEIETSFECDTFIPAIDCSVFQPWFLSPRVVENGVRFCFT
TYVRVRSSVVESESGCDDKISSNSCENSKFEIKNFSFLPKTLFEKHEEFLYLRMVQDILSSGNSKDDRTQTGTLSKFGCQRVFWRGVLEELLWFISGSTN
AKVLQEKGIHIWDDNASRDYLDRQDFVFTLIGLKDREEGDLGPVYGFQWRHFGARYTNMHADYTGQGFDQLADVITKIKNNPDDRRIILSAWNPADLKLM
ALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTYMIAHVCDLVPGDFTHVIGDAHIYLTHVRPLEEQLKKSPKPFPILKINPEKKDIDS
FSAADFKLIGYDPEQKIEMKMAV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G16370 THY-1 thymidylate synthase 1 (.1) Lus10040434
[exp]
0 1
AT4G15640 unknown protein Lus10033970
[exp]
4.0 0.9204
AT5G57250 Pentatricopeptide repeat (PPR)... Lus10036510
[exp]
4.2 0.9161
AT5G20890 TCP-1/cpn60 chaperonin family ... Lus10012380
[exp]
5.1 0.9338
AT5G26180 S-adenosyl-L-methionine-depend... Lus10025004
[exp]
6.3 0.9054
AT5G11200 DEAD/DEAH box RNA helicase fam... Lus10002021
[exp]
11.2 0.9185
AT5G23740 RPS11-BETA ribosomal protein S11-beta (.1... Lus10030113
[exp]
11.7 0.9284
AT3G25520 PGY3, ATL5, OLI... RIBOSOMAL PROTEIN L5 A, PIGGYB... Lus10004874
[exp]
14.3 0.9207
AT5G23300 PYRD pyrimidine d (.1) Lus10024096
[exp]
15.5 0.9170
AT5G60990 DEA(D/H)-box RNA helicase fami... Lus10031761
[exp]
17.5 0.9187
AT3G51800 ATEBP1, ATG2, E... A. THALIANA ERBB-3 BINDING PRO... Lus10005046
[exp]
18.0 0.9196

Lus10040434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.