Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66440 65 / 3e-12 unknown protein AT4G34560 64 / 4e-12 unknown protein AT2G21560 51 / 2e-07 unknown protein AT4G39190 44 / 5e-05 unknown protein AT1G75360 41 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023551 [exp] 343 / 9e-121 AT5G66440 95 / 2e-23 unknown protein Lus10042306 [exp] 169 / 4e-52 AT5G66440 97 / 2e-24 unknown protein Lus10026353 [exp] 158 / 3e-48 AT4G34560 101 / 2e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G157300 [exp] 134 / 8e-39 AT4G34560 107 / 9e-29 unknown protein Potri.009G119000 [exp] 134 / 1e-38 AT4G34560 90 / 8e-22 unknown protein Potri.005G120300 [exp] 60 / 2e-10 AT5G66440 134 / 4e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040435 pacid=23173881 polypeptide=Lus10040435 locus=Lus10040435.g ID=Lus10040435.BGIv1.0 annot-version=v1.0 ATGGATTCGTTCACCGTCAGGGCAGTGAAGGCGAAGGCGATAAAGAAGCAGAGGAAGATCCAGAATGTCACCAACATGCTGAGACTGGTGGAAATCCTAG TAGTCCTGGCGGTTCTCTCTCGGATTTCGGTCCAGCTCCCGGTCTCCCTCAAGGGCTCCGGAGACTACATCAAGGACTTTCTGCTCGTCCTCGTCAGCCC CCGGTTCGTGTTCGTCGTCGGGAACGTGATCGTCATCGTCCTCTTCGCCAAGTCCGGCCACCTCCCGGGGAGCACAGGGAAAAAATCGGATCTTTATGAA CAGTTTGTCAAAATGAGTGGGAAAACCACTCAGGAAAACAGAGGAAAACAGCGTGAGAAATTGGAAGCCGTTGCTAGAGTTTCAGAAAATAGAGTAAAAC CGAGTGATAAACTGGAATCCATTGTCAAGGAAGAAAGCTCTGTTTCTGCTACATCGATGATTGTGAAGAGCTACGAGAGGAGTCGGTCAGAGAATCTGAC GAGTTATCGAAGGCCCGAGAAGGAATTGAGGCGGTCCGCAACGGAGAATTTGACCAAGAAGAAGAAGAAAAACAGTGGGAGTGATAAGTTTCCCGAGGAT AATTTGAGCAGTGAGGAGTTCAAGAGTACGATCGAGGCGTTCATCGAGAGGCAGAAGAGGTTCCGACGAGACGAAGAGAACTCTGTAATTGTGTGA
AA sequence Show only first row Show all	>Lus10040435 pacid=23173881 polypeptide=Lus10040435 locus=Lus10040435.g ID=Lus10040435.BGIv1.0 annot-version=v1.0 MDSFTVRAVKAKAIKKQRKIQNVTNMLRLVEILVVLAVLSRISVQLPVSLKGSGDYIKDFLLVLVSPRFVFVVGNVIVIVLFAKSGHLPGSTGKKSDLYE QFVKMSGKTTQENRGKQREKLEAVARVSENRVKPSDKLESIVKEESSVSATSMIVKSYERSRSENLTSYRRPEKELRRSATENLTKKKKKNSGSDKFPED NLSSEEFKSTIEAFIERQKRFRRDEENSVIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66440			unknown protein		Lus10040435 [exp]	0	1
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	2.0	0.8170
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	3.2	0.8381
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10007327 [exp]	4.9	0.7763
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	6.0	0.7989
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	10.2	0.7936
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	13.2	0.7719
AT2G38890			unknown protein		Lus10023488 [exp]	15.0	0.7075
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	15.5	0.7068
AT5G66440			unknown protein		Lus10023551 [exp]	15.7	0.7942
AT5G20885			RING/U-box superfamily protein...		Lus10019507 [exp]	16.5	0.7051

Compare expression of checked genes

Lus10040435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.