Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39210 696 / 0 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 664 / 0 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT1G27680 658 / 0 APL2 ADPGLC-PPase large subunit (.1) AT5G19220 615 / 0 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT5G48300 449 / 5e-154 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT1G05610 303 / 1e-97 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023553 [exp] 965 / 0 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10034053 [exp] 615 / 0 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10007209 [exp] 614 / 0 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10010515 [exp] 601 / 0 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010088 [exp] 595 / 0 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10025187 [exp] 450 / 2e-154 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10016069 [exp] 448 / 7e-154 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10042456 [exp] 293 / 3e-93 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 271 / 3e-85 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118800 [exp] 766 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.004G157100 [exp] 765 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.002G033400 [exp] 680 / 0 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.005G229700 [exp] 670 / 0 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.014G110000 [exp] 640 / 0 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.008G195100 [exp] 610 / 0 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.014G171800 [exp] 449 / 3e-154 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.007G146100 [exp] 329 / 1e-107 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.017G001700 [exp] 329 / 3e-107 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10040437 pacid=23173971 polypeptide=Lus10040437 locus=Lus10040437.g ID=Lus10040437.BGIv1.0 annot-version=v1.0 ATGGGTTCCTGCTGCGTGGCGTTGGAAGCCAGTAACCTTCTGGTGAACAGAGAGCTGAGGGTTACACACTCGCAGAATGATCCTTTCACTCGGTTGAAGT TTGAGAAGAATCAGAAGAAGAGCATCAATAAGTCGAAATCTCGTTTAGTCTCTTCAGTCTTGACCTCCAGCAATGGCAGAGGAACTGTGATCCTACAACC AGAAGCAAGGCCAGATAGGAAGAGAGTGGATCCAAAAGATGTGGCTTCCATAATACTGGGAGGAGGTTCTGGTGCTCAGCTGTTTCCTCTTACCAAAAGG ACTGCAACTCCCGCTGTACCAATAGGAGGATGCTACAGGCTGATTGATGTGCCTATGAGCAACTGCATCAACAGTGGGATCAACAAGATCTTCGTCCTTA CCCAGTTCAACTCGACATCCCTCAATCGACACATAGCTCGCGCCTACTTTGGCAATGGCATCAACTTCGGAGACGGATTTGTTGAGGTTCTGGCCGCCAC TCAAACCGCCGGTGAAGCAGGCATGGAGTGGGATGCCAAGACCAGGAACGTAGAGAACATCGTAATCTTGTGTGGCGATCACCTTTACCGTATGGATTAC ATGGACTTCGTTCAGCACCATGTTGATAGCAATGCGGATATCACCATTTCGTGTGCTGCTGTGGGTGAAAGCCGTGCATCAGATTACGGATTGGTCAAGT TAGACAGCAAAGGTAGAATTATCCAGTTTGCTGAGAAACCAAAGGGTGCTGACCTAAAATCAATGCAAGTGGATACGACTCGGATAGGTTTGACTCCGCA GAAAGCGAAGCAGTCGCCGTATATTGCTTCGATGGGAGTTTACGTGTTTAAAACTGACATGCTGTTGAAGCTCCTGAAGTGGAGGTTTCCTACAGCAAAT GACTTTGGCTCTGAGATCATCCCTGCAGCAGTTATGGAGCATGATGTCAATGCATACATCTTTCGAGACTACTGGGACGACATTGGAACGATCGATTCGT TCTACCAAGCTAACTTAGCTCTCACTGAAGAGCCTCCAATGTTCGAGTTTTACGACCCACACAAACCGATTTACACATCTCCAACGTTCTTGCCGCCAAC TAAGATCGATCAATCTCGGATTGTAGATGCAATAATCTCCCACGGTTGTTTCTTGAGAGATTGTACTGTCCAGCATTCGGTTATTGGTGAGCGATCTCGT CTGGATTCCGGTGTTGAGCTAGCGGATACTGTGATGTTAGGAGCAGATTACTACCAAACCGAAGCTGAAATAGCATCTCTTCTGGCAGATGGAGGAGTCC CAATTGGCATTGGGAAGAACACCAAAATCAGGAAGTGCATTATCGATAAGAACGCGAAGATAGGGAAAGACGTGATGATCGTCAACAAAGATGGTGTAGA AGAAGCTGACAGGCCAGAACTAGGGTTCTACATTCGAAAAGGGATCACCGTTGTAGCAGAGAAGGCGACAATCGAAGATGGAACTGTCATATAA
AA sequence Show only first row Show all	>Lus10040437 pacid=23173971 polypeptide=Lus10040437 locus=Lus10040437.g ID=Lus10040437.BGIv1.0 annot-version=v1.0 MGSCCVALEASNLLVNRELRVTHSQNDPFTRLKFEKNQKKSINKSKSRLVSSVLTSSNGRGTVILQPEARPDRKRVDPKDVASIILGGGSGAQLFPLTKR TATPAVPIGGCYRLIDVPMSNCINSGINKIFVLTQFNSTSLNRHIARAYFGNGINFGDGFVEVLAATQTAGEAGMEWDAKTRNVENIVILCGDHLYRMDY MDFVQHHVDSNADITISCAAVGESRASDYGLVKLDSKGRIIQFAEKPKGADLKSMQVDTTRIGLTPQKAKQSPYIASMGVYVFKTDMLLKLLKWRFPTAN DFGSEIIPAAVMEHDVNAYIFRDYWDDIGTIDSFYQANLALTEEPPMFEFYDPHKPIYTSPTFLPPTKIDQSRIVDAIISHGCFLRDCTVQHSVIGERSR LDSGVELADTVMLGADYYQTEAEIASLLADGGVPIGIGKNTKIRKCIIDKNAKIGKDVMIVNKDGVEEADRPELGFYIRKGITVVAEKATIEDGTVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10040437 [exp]	0	1
AT1G04500			CCT motif family protein (.1)		Lus10023727 [exp]	1.7	0.8320
AT1G55690			Sec14p-like phosphatidylinosit...		Lus10008360 [exp]	4.0	0.7991
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10023553 [exp]	8.5	0.8304
AT4G09020		ATISA3, ISA3	isoamylase 3 (.1)		Lus10036474 [exp]	9.5	0.7683
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	10.4	0.8209
AT2G41705			camphor resistance CrcB family...		Lus10028071 [exp]	15.5	0.7476
AT3G62630			Protein of unknown function (D...		Lus10020690 [exp]	16.4	0.7743
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	19.9	0.7641
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10038921 [exp]	20.2	0.7581
AT1G45207			Remorin family protein (.2)		Lus10005708 [exp]	20.3	0.7685

Compare expression of checked genes

Lus10040437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.