Plant FIBer expression Database

Lus10040438 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16365 127 / 3e-31 F-box family protein (.1.2.3.4)
AT4G34550 65 / 3e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023554
[exp]
1254 / 0 AT2G16365 132 / 5e-33 F-box family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G157000
[exp]
306 / 6e-94 AT2G16365 105 / 7e-24 F-box family protein (.1.2.3.4)
Potri.009G118651
[exp]
298 / 3e-91 AT2G16365 108 / 5e-25 F-box family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10040438 pacid=23173870 polypeptide=Lus10040438 locus=Lus10040438.g ID=Lus10040438.BGIv1.0 annot-version=v1.0
ATGTCGAATGGCAAGGAGGAGATTTCTGGAAGTGGTGGGTCTCAGTCTTCATGGATTGGTCATTGGTTGGGTAGGAATTGTAGGGTGGGAAATGAAGCAG
CAGCAGCTTCAGTGACTAATGAGGTGAGTGAAGAGATTCATCATGGAGTAAAGTATCACCGTCTATTTGATCTGTCTGGGAAAGGATCCGAGGGTGGAGA
GCGGTTTCGAGATGTGGGGAAGCGGAAGATGGCGGATTTTGTGGGTGGGAGTAGTACGAGTACGAGGGATGGGTTGGAGAGGTTGAGGAACGAGCCGTCT
GAAGGTCAGCCTTATCTCATGCTAGGTGTTTTGCTGGACGAGGGGATTGCTTTGCCTCCAGCAAAAAAGAGGGTTGATGTTTCGCGGTTGGATGCTTCTT
CGAGTAGAGTTGAGAGCCACTTGCCTGGTTCTGCTGCATTGGTTGGTAGCAGCGAAATGGGAACTCCGCTTCTACCTCAGAGGAATGGGGTTGGTGTTTT
TCCGTCACGAGGCTACCTTTCGGGTGCCAGTCCTCAGGTTGTTCCATATGAATTTGAAAGCAGGAGGAATAGAGTGCAATGTGCTTCCCGTGTAGAAGAC
AATTCGGATCAAGCAGGAAATTCGTCTTGGGATCGCTCGAACAAGATCAGTTTCGGTGGAGCTCTTTCGGTGCATGACCCTTCAACCAGCAAGAGTGAAG
CAAGAGGCTTTGCGGCTGAGATGATGCCTCTTTCGGATCATTTTCCCTTCCAGAGTGGCCCTATCGAGGAGGCATTTCGTAGCTCTCACGGTCTATCAGG
AATGCCCTCTTCTTCTGCACATGGTGTGCAGGCTATGAGAATACGTACAACTGTCGATTCCATCACAGAATTTCCTGCCGGTTGTGCAAAGGTTTCACAT
TCAACTCACCACTTTTTCATCACAAAGAAGACTGATATGGATGAAGGTCAGATGTTCCAACAGTCGTCAGTATCCACAAAGTTCAAAGGAAAATCATTAT
GTGAATTGTTTGGTTTAAAACCTGATGATCGCTCTCGTAATAACCAAGGAGTGAAGTTGCAACAACTTGACAGTTCCGCAGAATGCGAGGGCAAAGAAGA
CACTGAAACTATCAAGAGTTTTCTACATGATTCAAAGAATGGATCGTGCTCTGAGACCAACACTGTGGACATCGATGCTGCCAGACATAACCAACTCCTT
GGTTTGGCTTCACATCCATCAAGTAAGGTAAATTTACCATCACCTATATGGCAAGATCTAATTGCTTCAGTCGGTCAAGAAGTTACGGGTAGAATGGTGA
AAAAGCTGTTACCCGATATAAACGAAGAGTTTTGTCTACATCCTGATGTATCTGGGACAGCAGATGATAAGGAGACGAGCACGTCAATAACGCAAAGTCT
GGATGTGGAATGCTTGCTCACTCATCCTGGAAACTCCAGAAATCTGAAGTCAAGGGCTTGTCCCGACCCTGTCAGGCTCGATCCATGTAGTAGATGGGTA
AGACGTCTCAAGCCAAGTGCTCCAGCACTCTTGCCCTACACCTACGGTTCTAAAGGTTCAGACTTAGGGGAAGCCTCTCATGGAAAAGTGAATGGACTCT
TCACCAAAATGATAAGTGATCCCATTGGAAATGATCTTCCGGGATTTGATTGCCCTACTACAATATTGTCAGAAAGGAATGCTGAATCTACTTCCACCAA
TTCTGAGGAGAAAGCTCATGACCTCGTCGAAGCCCACTCGCATCCTTGGATTCGACGATGGTCTCGTAACCCAGTTGCTTCTTCCCTGAGAAGGAAAGCT
GATTGTGTGATGGCTAGCGAATCTCGAGTCGGAAAGGGAACATCAAGTGAAGTACCGGAGAAGCAGTTTCCGAGTATAGCTGCTATGGCACTCATGGGAA
AGGCCATGACTGGTTTTCAACCTTGTGAGTTCAGGAAAAGGGGATGTCTTATAGTTTGGAGTACCAAGGGCTATTGA
AA sequence
>Lus10040438 pacid=23173870 polypeptide=Lus10040438 locus=Lus10040438.g ID=Lus10040438.BGIv1.0 annot-version=v1.0
MSNGKEEISGSGGSQSSWIGHWLGRNCRVGNEAAAASVTNEVSEEIHHGVKYHRLFDLSGKGSEGGERFRDVGKRKMADFVGGSSTSTRDGLERLRNEPS
EGQPYLMLGVLLDEGIALPPAKKRVDVSRLDASSSRVESHLPGSAALVGSSEMGTPLLPQRNGVGVFPSRGYLSGASPQVVPYEFESRRNRVQCASRVED
NSDQAGNSSWDRSNKISFGGALSVHDPSTSKSEARGFAAEMMPLSDHFPFQSGPIEEAFRSSHGLSGMPSSSAHGVQAMRIRTTVDSITEFPAGCAKVSH
STHHFFITKKTDMDEGQMFQQSSVSTKFKGKSLCELFGLKPDDRSRNNQGVKLQQLDSSAECEGKEDTETIKSFLHDSKNGSCSETNTVDIDAARHNQLL
GLASHPSSKVNLPSPIWQDLIASVGQEVTGRMVKKLLPDINEEFCLHPDVSGTADDKETSTSITQSLDVECLLTHPGNSRNLKSRACPDPVRLDPCSRWV
RRLKPSAPALLPYTYGSKGSDLGEASHGKVNGLFTKMISDPIGNDLPGFDCPTTILSERNAESTSTNSEEKAHDLVEAHSHPWIRRWSRNPVASSLRRKA
DCVMASESRVGKGTSSEVPEKQFPSIAAMALMGKAMTGFQPCEFRKRGCLIVWSTKGY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G16365 F-box family protein (.1.2.3.4... Lus10040438
[exp]
0 1
AT5G24470 APRR5 pseudo-response regulator 5 (.... Lus10023229
[exp]
1.4 0.8659
AT4G17960 unknown protein Lus10030960
[exp]
6.2 0.7789
AT3G22550 Protein of unknown function (D... Lus10025770
[exp]
9.8 0.7589
AT5G64460 Phosphoglycerate mutase family... Lus10032819
[exp]
13.9 0.7441
AT2G39450 ATMTP11 Cation efflux family protein (... Lus10023439
[exp]
20.4 0.7637
AT3G54340 MADS AP3, ATAP3 APETALA 3, K-box region and MA... Lus10033187
[exp]
25.1 0.7306
AT5G15860 ICME, ATPCME Isoprenylcysteine methylestera... Lus10034399
[exp]
25.5 0.7449
AT4G14210 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoen... Lus10021967
[exp]
30.0 0.7510
AT5G24470 APRR5 pseudo-response regulator 5 (.... Lus10008879
[exp]
31.5 0.7139
AT3G26730 RING/U-box superfamily protein... Lus10031993
[exp]
32.3 0.7131

Lus10040438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.