Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25730 810 / 0 FtsJ-like methyltransferase family protein (.1) AT5G01230 134 / 2e-34 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G13830 71 / 2e-13 FtsJ-like methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023555 [exp] 1272 / 0 AT4G25730 941 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10017186 [exp] 133 / 6e-34 AT5G01230 589 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021124 [exp] 117 / 8e-29 AT5G01230 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10040283 [exp] 78 / 8e-16 AT5G13830 340 / 5e-120 FtsJ-like methyltransferase family protein (.1) Lus10023402 [exp] 69 / 1e-12 AT5G13830 312 / 1e-108 FtsJ-like methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118400 [exp] 936 / 0 AT4G25730 840 / 0.0 FtsJ-like methyltransferase family protein (.1) Potri.019G056300 [exp] 135 / 1e-34 AT5G01230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G202200 [exp] 84 / 7e-18 AT5G13830 310 / 6e-108 FtsJ-like methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01728 [flax] [poplar] FtsJ FtsJ-like methyltransferase CL0063 [flax] [poplar] PF07780 [flax] [poplar] Spb1_C Spb1 C-terminal domain CL0063 [flax] [poplar] PF11861 [flax] [poplar] DUF3381 Domain of unknown function (DUF3381)
Representative CDS sequence Show only first row Show all	>Lus10040439 pacid=23173988 polypeptide=Lus10040439 locus=Lus10040439.g ID=Lus10040439.BGIv1.0 annot-version=v1.0 ATGGGTAAGGTGAAAGGTAAGCATCGTTTGGACAAGTACTATCACCTCGCCAAGGAGCACGGATACCGTTCCCGTGCCTCGTGGAAACTCGTCCAGCTCG ATTCCAAGTTCAAGTTCCTCCACTCTGCCCGCGCTGTCCTCGATCTCTGCGCCGCCCCCGGAGGATGGATGCAGGTCGCCGTCGAGAAGGTCCCCGTCGG GAGTCTGGTGCTCGGTATCGATTTGGTGAGGATCGCTCCTCTCCGTGGCGCGTTGTCGATCGAGCAGGATATTACCAAGTCCGAGTGCAAGTCGAAGATT AAGAAGATTATGGGGGATAATGGGGTGAAGGCGTTTGATTTGGTTCTTCACGATGGTTCTCCTAATGTCGGAGGTGCTTGGACGCAGGAGGCCATGTCGC AGAATGCTTTGGTTATCGATGCACTGAAGTTGGCTACACAAGTGTTGGCTCCCAAGGGGAATTTCATCACTAAAGTGTTCAGGTCACAAGATTACAGTGC AGTTATCTACTGTTTAAATCAGTTCTTTGAGAAGGTTGAGGTTGATAAACCATTAGCCAGTCGTTCAGCGTCTGCAGAAATATTCGTGCTGGGGCTTAAG TACAAAGCACCTGCAAAGATTGACAATGACCTGCTCGATATAAAGAAGCTTTTTGCGCATGTTGATCCACAAAGAAAGCCTCTAGATCCCCTCAGAGGAA CAAAGCAAAAGCGTCATCGTGACGGTTATGAAGACGGACAGTCTATGATCCGGAAAGTCTCATCAGCTGCTGATTTTATCTGGTCCAACACCCCTCTTGA TGTCCTTGGCTCAGTTACTTCAATCACCTTTGAGGACCCTGTATCCTTGCCGATAAAGGATCACGAGTTGACAACGGAAGAGGTCAAAGCCCTTTGTGAG GATCTTCCTGTGTTAGGGAAGCAAGACTTCAAGCATCTTCTCAAATGGCGGATGAATTTAAGGAAGGCGCTGGCCCCTACCGAAAAAGCTAGCTCTGCTG CTGCTGCTAACAGCGAGGAAAAGAAAGAAGTAGATGAAGACGATAAGATGCTTAATGAAATGGAGGAGTTAACAAAGGCTATGGAGCGGAAGAAGAAAAG AGAGAAGAAAATAATTGCTAAAAGACGGGAAAAGGACAAGGCCCGAAAAGCATCTGGAGGAATGTCAATGGATGTACATGAAGATGATGGCTGCACTGAT ATCGAGTTATTTTCTCTTGCATCAATTAAGGGAAAGAACGATTTGGTTGCTATAGATAATGATGAGAATGGTGACGCAAGGGATAGTGACGAGGAGGAAA ACCCTGATGATGATGCTAGGGAATCATCCGGCAATTCAGACTCCGAGGCAGAGCGTCAAAAATATGATGCTAAAATGGAAGACTTCCTCGACAATCTCTA TGAACGGTTTGTAACAAAAAAGGAAGGAAGTACAAAGCAGAGGAAACGTGCAAGGCAAGCCTACTCCGAGCAGCTCTTGGATGAGGAGAATGACGATATG GAGCACTCAGATTACGATTCAGACAGGGAGCCGGCCGATCGCGAAGCAAATCCTCTCATGATTCCGCTCAACGACGGCGAAGAACCGACAAAAGAAGAGA TTGCAAACAAATGGTTCGCTCAGGAAATATTCACCAAAGCAGCGGAGGAAGAGGATCTGGTCATGTCCGACAGCGAGCAAGAGGATGCCCCCGCAATGGA GGTCGATAAGAAGCAGCAAGACAAACGTGTTGCTCCGAAAAAGGCTGCGGTAAGGACTAGTGAACCTGATTTCGAGATTGTTCCTGCCCCCGAAACTGAT TCTTCGGATTCGTCCTCGGACGAATCAGAAGACGACAGCATCGAGAAGAAGGCCGAGATACTGGCCTGTGCGAAGAAGATGCTGAGAAAGAAACAAAGAG AGCAAATGCTCGACGACGGCTATAACAAGTACATGTTCGATGACGAGGGCTTGCCCGGTTGGTTCCTCGAGGAAGAGAGGAGGCATCGCCAGCCTGTCAA ACCGGTCACCAAGGAGGAGATGAACGCAATGCGGGCCCAGTTCAAAGAGATCAATGCACGGCCGGCTAAGAAGGTGGCCCAAGCCAAGGCTCGAAAGAAG CGTGCCACCATGAGGAAGCTTGAGAAGATTAAGAAGAAGGCCAACGCGATCTCGGACCAGACCGAGATATCCGAACCCTCAAAGAGCAAGATGATCGATA AGCTGTACAAGAGCGCTGCTCCAAAGAAGCCGAAGAAGGAGTACGTAGTTGCGAAGAAGGGTGTCGCTGTGAAGGGTGGCAAGGGGAAGGTCGTAGTTGA TCGGCGGATGAAAAAGGACGTCCGTGGAGTTAGCAAGAAAGGCAAAGGTGGCTCGAAGAAGAACGGTAAGGGCCAGCAAGGCGGTAAAGGATCTGCAAGG AAAGGCGGTAAACCGAGACCGGCTGATAAGGAAACAAAGAGAGGATCTGCTCGACCGAGGTCGTTTTGA
AA sequence Show only first row Show all	>Lus10040439 pacid=23173988 polypeptide=Lus10040439 locus=Lus10040439.g ID=Lus10040439.BGIv1.0 annot-version=v1.0 MGKVKGKHRLDKYYHLAKEHGYRSRASWKLVQLDSKFKFLHSARAVLDLCAAPGGWMQVAVEKVPVGSLVLGIDLVRIAPLRGALSIEQDITKSECKSKI KKIMGDNGVKAFDLVLHDGSPNVGGAWTQEAMSQNALVIDALKLATQVLAPKGNFITKVFRSQDYSAVIYCLNQFFEKVEVDKPLASRSASAEIFVLGLK YKAPAKIDNDLLDIKKLFAHVDPQRKPLDPLRGTKQKRHRDGYEDGQSMIRKVSSAADFIWSNTPLDVLGSVTSITFEDPVSLPIKDHELTTEEVKALCE DLPVLGKQDFKHLLKWRMNLRKALAPTEKASSAAAANSEEKKEVDEDDKMLNEMEELTKAMERKKKREKKIIAKRREKDKARKASGGMSMDVHEDDGCTD IELFSLASIKGKNDLVAIDNDENGDARDSDEEENPDDDARESSGNSDSEAERQKYDAKMEDFLDNLYERFVTKKEGSTKQRKRARQAYSEQLLDEENDDM EHSDYDSDREPADREANPLMIPLNDGEEPTKEEIANKWFAQEIFTKAAEEEDLVMSDSEQEDAPAMEVDKKQQDKRVAPKKAAVRTSEPDFEIVPAPETD SSDSSSDESEDDSIEKKAEILACAKKMLRKKQREQMLDDGYNKYMFDDEGLPGWFLEEERRHRQPVKPVTKEEMNAMRAQFKEINARPAKKVAQAKARKK RATMRKLEKIKKKANAISDQTEISEPSKSKMIDKLYKSAAPKKPKKEYVVAKKGVAVKGGKGKVVVDRRMKKDVRGVSKKGKGGSKKNGKGQQGGKGSAR KGGKPRPADKETKRGSARPRSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	0	1
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	1.0	0.9777
AT3G03060			P-loop containing nucleoside t...		Lus10031787 [exp]	2.0	0.9572
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019208 [exp]	3.2	0.9422
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	4.6	0.9485
AT3G02760			Class II aaRS and biotin synth...		Lus10030341 [exp]	7.0	0.9321
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	7.2	0.9258
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10039874 [exp]	8.9	0.9435
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	9.5	0.9072
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	9.6	0.9212
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	10.0	0.9233

Compare expression of checked genes

Lus10040439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.