Plant FIBer expression Database

Lus10040441 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08580 71 / 9e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023557
[exp]
137 / 3e-39 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1)
Lus10003502
[exp]
73 / 2e-17 AT1G08580 81 / 9e-21 unknown protein
Lus10002417
[exp]
50 / 2e-09 AT1G08580 61 / 1e-13 unknown protein
Lus10000388
[exp]
46 / 8e-08 AT1G08580 61 / 6e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G049300
[exp]
81 / 8e-21 AT1G08580 80 / 3e-20 unknown protein
Potri.013G091200
[exp]
71 / 5e-17 AT1G08580 66 / 2e-15 unknown protein
PFAM info
Representative CDS sequence
>Lus10040441 pacid=23174054 polypeptide=Lus10040441 locus=Lus10040441.g ID=Lus10040441.BGIv1.0 annot-version=v1.0
ATGGCGAAGTTTAATGAAGTGCTCAAGAGGAAGAGGGCAGCGATAGCAGAAAAAAAGAGAATCGTTCACGGAGATCCCCTCACCGCTAAATTGAAGGCTA
AACAGCAGAATCAATCTGTCTCTGGGAAACGCAAGCGCAAGCTGTTGAACAAATGGCGCAGAGACCAGAAAGAAGCTGTAGAAAAAGGACTTGTCACCAT
GGAAGATGTAGAGATGGCGGTTGCAGATGGTGAAGGCACATCTAAAGATAGCAGTAAAATTTCCAACAAGTTGTTTAACGTAAAAAGAGGACTGAAGTTG
AAGCAGTTAGACCGTAAAAAAGGTCATATTCCAACACTATCTGCTCCTTTTAGGAATATAATTGAAAAGTGCATGAATGCAGGCTGA
AA sequence
>Lus10040441 pacid=23174054 polypeptide=Lus10040441 locus=Lus10040441.g ID=Lus10040441.BGIv1.0 annot-version=v1.0
MAKFNEVLKRKRAAIAEKKRIVHGDPLTAKLKAKQQNQSVSGKRKRKLLNKWRRDQKEAVEKGLVTMEDVEMAVADGEGTSKDSSKISNKLFNVKRGLKL
KQLDRKKGHIPTLSAPFRNIIEKCMNAG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G08580 unknown protein Lus10040441
[exp]
0 1
AT5G19370 rhodanese-like domain-containi... Lus10000413
[exp]
2.4 0.8589
AT4G30220 RUXF small nuclear ribonucleoprotei... Lus10006867
[exp]
2.8 0.8635
AT1G47278 unknown protein Lus10016567
[exp]
3.3 0.8277
AT5G08180 Ribosomal protein L7Ae/L30e/S1... Lus10004366
[exp]
5.8 0.8591
AT2G27970 CKS2 CDK-subunit 2 (.1) Lus10041349
[exp]
6.0 0.8392
AT5G59750 DHBP synthase RibB-like alpha/... Lus10040865
[exp]
6.2 0.7875
AT2G21870 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, ... Lus10012682
[exp]
7.1 0.7768
AT3G62870 Ribosomal protein L7Ae/L30e/S1... Lus10010745
[exp]
9.4 0.8427
AT1G11240 unknown protein Lus10018438
[exp]
11.6 0.8337
AT1G74270 Ribosomal protein L35Ae family... Lus10035539
[exp]
12.2 0.8040

Lus10040441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.