Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 398 / 2e-140 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 390 / 9e-137 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 386 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G19540 348 / 2e-120 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 269 / 1e-89 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 256 / 4e-84 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 248 / 2e-81 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023557 [exp] 611 / 0 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 436 / 5e-155 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 434 / 2e-154 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 429 / 1e-152 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 415 / 8e-147 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 342 / 1e-118 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 285 / 1e-95 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10012147 [exp] 272 / 2e-90 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1) Lus10007599 [exp] 281 / 4e-90 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 459 / 1e-164 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 437 / 1e-155 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 414 / 6e-146 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 409 / 1e-144 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 408 / 4e-144 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 379 / 1e-132 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 302 / 8e-104 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 293 / 5e-99 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.009G118000 [exp] 291 / 3e-98 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.003G100200 [exp] 286 / 5e-96 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10040442 pacid=23173943 polypeptide=Lus10040442 locus=Lus10040442.g ID=Lus10040442.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCACCAAGAGCAAGATCCTGTTCATCGGAGGAACAGGGTACATCGGCAAATTCATCGTCGAAGCCAGCGCCAAATCCGGCCACCCTACTT ACGCCCTCGTCAGGAAATCGACTCTCTCATCTCCCAGAAGATCCAATCTCCTCAGCACCTTCAAGAACTTGGGCGTCAATTTCCTCATCGGGGATTTGAA CGACCATGGAAGCTTGGTGGACGCAATGAAGAAAGTTGATGTGGTGATTTCAACAGTTGGGCATGGGATGCTGACTGAGCAAGTGAAGATCATAGCCGCC ATTAAAGAAGCTGGAAACGTCAAGAGGTTTTTCCCATCGGAGTTTGGGAACGACGTGGATCGAGTGGTGGCAGTCGAGCCAGCGCAATCGGCGTACAATG TCAAGATTCAGATTCGTCGAGCTGTCGAAGCTGAAGGGATCCCATTCACATATGTCTCCTGCAACTGCTTTGCTGGTTACTTCCTCAGCAACTTGGCTCA GCCTTCTGGTGATGTCCCTCCCAGGGATAAAGTTATCATCTTGGGAGACGGCAATGCTAAAGCGGTTTTTAACAGGGAGGATGATATCGGGACGTATACG ATTCGAGCAGTGGACGATCCACGAACGTTGAACAAGCTTGTCTACATCAGGCCTCCGAACAACATCTTCTCGTTCAACGATCTGGCGTCTCTGTGGGAGA GGAAGATCGGGAAGAAACTGAAAAGGGTCTATGTTCCAGAAGAAGAGATTCTCAAGCACACTAGAGGAGATGTGATGCTGGCGCTTAACCATTCGATTCT GGTGAAGGGATGCCAGACGAGCTTCGAAATCGAGGATTCGTTCGGTGTAGAGGCATCAGAGATTTACCCTGATGTTAAGTATACTACTGTTGATGAGTAT CTGAACCAGTTTGTGTAG
AA sequence Show only first row Show all	>Lus10040442 pacid=23173943 polypeptide=Lus10040442 locus=Lus10040442.g ID=Lus10040442.BGIv1.0 annot-version=v1.0 MASSTKSKILFIGGTGYIGKFIVEASAKSGHPTYALVRKSTLSSPRRSNLLSTFKNLGVNFLIGDLNDHGSLVDAMKKVDVVISTVGHGMLTEQVKIIAA IKEAGNVKRFFPSEFGNDVDRVVAVEPAQSAYNVKIQIRRAVEAEGIPFTYVSCNCFAGYFLSNLAQPSGDVPPRDKVIILGDGNAKAVFNREDDIGTYT IRAVDDPRTLNKLVYIRPPNNIFSFNDLASLWERKIGKKLKRVYVPEEEILKHTRGDVMLALNHSILVKGCQTSFEIEDSFGVEASEIYPDVKYTTVDEY LNQFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39230			NmrA-like negative transcripti...		Lus10040442 [exp]	0	1
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	4.1	0.9573
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	6.3	0.9551
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	7.2	0.9565
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10035258 [exp]	7.4	0.9549
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	10.4	0.9505
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	10.5	0.9564
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10033107 [exp]	10.7	0.9296
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042486 [exp]	12.1	0.9207
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10014709 [exp]	12.8	0.9264
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	13.6	0.9485

Compare expression of checked genes

Lus10040442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.