Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34540 290 / 6e-98 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 224 / 8e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 213 / 1e-67 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 208 / 7e-66 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 207 / 4e-65 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 192 / 9e-60 NmrA-like negative transcriptional regulator family protein (.1) AT4G13660 141 / 9e-40 ATPRR2 pinoresinol reductase 2 (.1) AT1G32100 135 / 1e-37 ATPRR1 pinoresinol reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023558 [exp] 440 / 8e-157 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 220 / 3e-70 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 219 / 1e-69 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 215 / 2e-68 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 198 / 8e-62 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 199 / 1e-60 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 189 / 2e-58 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 180 / 2e-55 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10042312 [exp] 153 / 8e-45 AT4G39230 253 / 1e-83 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118000 [exp] 318 / 6e-109 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 224 / 8e-72 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 221 / 7e-71 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 212 / 4e-67 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 209 / 2e-66 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 207 / 3e-65 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133300 [exp] 165 / 6e-49 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.003G100200 [exp] 164 / 1e-48 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.011G168400 [exp] 152 / 7e-44 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 152 / 8e-44 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10040443 pacid=23173871 polypeptide=Lus10040443 locus=Lus10040443.g ID=Lus10040443.BGIv1.0 annot-version=v1.0 ATGTACAGTAATAACAGAAAACGACTTTCCATTACAGCTTCTCCTTCTTCTTCGCTTTCTCTGTTCTTCTCTTCTCTTCCATTCATCAAACTTCACACCA TCCTCAACTGCTCTCACCCAACTCTCCTCCTCGTCAGAGAATCGGCTTTCCAAGACCCAATCAAAGCTCACAAGCTCCAATCCCTCACCAATGCCGGCGC CTCCGTCATTAAGGTTTCATTGCAGGACGAGAGTAGCCTTGTGGAGGCAGTGAATCGAGTTGATGTTGTGATCTGTTCGATTCCGTCTAAACAAGCTCAT GATCAGAAGCTGCTTATCAATGTCATCAAACAAGCCGGAAGCCGGATAAAGAGGTTCATCCCGTCCGAATTCGGAGCAGATGCAGACAGATCACAGATAT CAGGAATGGATCATGGATTCTACTCTAGAAAAGCCGAGATCAGACGGACTCGCCTCTCACCTAGAGACAAGGTCACAATCTTCGGAAACGGCAATGTGAA AGGTGTGTTTGTGAAGGAACAGGATGTAGCTACTTTGACGATGAGAGCAGTGGACGATCCTTCCACGCTGAACAAGACGCTGTACTTGAGGCCTCCGGGG AACGTGTGTTCGATGAACGAGCTTGTGACGATCTGGGATGGGCTGATTGCGAAGACTGTGGAGAGATGCTATGTTTCGGAAGAAGAGATGTTGAACATAA TAAATGGTGGTCATTTACTGGCGACTCCGTATCCGGGGAAGATGGAGCTTGTGTTCATATACTCTGTGTTTGTGAGAGGAGATCATACCTTCTATGAGAT TGATCCTGCCACTGGAGTAGAAGGCTCAAAGGTGTATCCAGATGTTGGGTATACTACCATTGTTGAGTACTTGTCCACCTTGGTTTGA
AA sequence Show only first row Show all	>Lus10040443 pacid=23173871 polypeptide=Lus10040443 locus=Lus10040443.g ID=Lus10040443.BGIv1.0 annot-version=v1.0 MYSNNRKRLSITASPSSSLSLFFSSLPFIKLHTILNCSHPTLLLVRESAFQDPIKAHKLQSLTNAGASVIKVSLQDESSLVEAVNRVDVVICSIPSKQAH DQKLLINVIKQAGSRIKRFIPSEFGADADRSQISGMDHGFYSRKAEIRRTRLSPRDKVTIFGNGNVKGVFVKEQDVATLTMRAVDDPSTLNKTLYLRPPG NVCSMNELVTIWDGLIAKTVERCYVSEEEMLNIINGGHLLATPYPGKMELVFIYSVFVRGDHTFYEIDPATGVEGSKVYPDVGYTTIVEYLSTLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34540			NmrA-like negative transcripti...		Lus10040443 [exp]	0	1
AT3G11920			glutaredoxin-related (.1)		Lus10034196 [exp]	5.5	0.6744
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10020776 [exp]	42.3	0.5825
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10028236 [exp]	56.8	0.5437
AT1G66170		MMD1	MALE MEIOCYTE DEATH 1, RING/FY...		Lus10031357 [exp]	118.6	0.5005
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Lus10037191 [exp]	206.4	0.5102
					Lus10035468 [exp]	210.7	0.4973

Compare expression of checked genes

Lus10040443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.