Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023559 [exp] 491 / 5e-174 ND / Lus10008536 [exp] 153 / 3e-44 ND / Lus10006341 [exp] 152 / 3e-43 ND / Lus10038309 [exp] 153 / 1e-42 ND / Lus10024122 [exp] 146 / 3e-40 ND / Lus10005392 [exp] 144 / 3e-39 ND / Lus10005393 [exp] 137 / 2e-37 ND / Lus10029057 [exp] 138 / 4e-37 ND / Lus10024121 [exp] 138 / 5e-37 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156500 [exp] 260 / 3e-83 ND / Potri.001G388900 [exp] 163 / 2e-46 ND / Potri.001G387900 [exp] 158 / 1e-44 ND / Potri.001G388801 [exp] 158 / 2e-44 ND / Potri.001G388600 [exp] 156 / 6e-44 ND / Potri.011G047300 [exp] 156 / 8e-44 ND / Potri.011G108300 [exp] 155 / 2e-43 ND / Potri.001G388100 [exp] 152 / 1e-42 ND / Potri.001G388450 [exp] 152 / 2e-42 ND / Potri.001G388200 [exp] 150 / 1e-41 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase
Representative CDS sequence Show only first row Show all	>Lus10040444 pacid=23174207 polypeptide=Lus10040444 locus=Lus10040444.g ID=Lus10040444.BGIv1.0 annot-version=v1.0 ATGGATCCTGGAAAATGGATCCTCCCACTCACCATCTCCACCATTCTCGCCGTCACCCTCTTCATCTTCTCCTCCCCTCAACTCGCCACTGAACTCGTCG GGAAGCTAAACGGCGTCGTACCAGACATTTTCTTCGGATGGTCAACGCCGGAGAACAATCTGCAGAAGGGCAAACTCCTCCCAGTCCAAGTCAACTTATC AGCCTGCCTCCCGACGTTCGGCCGACCAGGGAAGCCAGTCTACTGCTGCCCGCCGCGAAACATCCTCGACGACCCAATCGTTGACTTCCAGTTCCCCGAC CCGGCGACCAACCCAGTCCGGGTTCGCCGCTCGGCGAACCGGCTGGATAAGGAGTCCATTGCCAAATACGAGAAGGCGGTCGAGATGATGAGATCTCTAC CTTACTCCGACCCGAGGAGCTACACGCGCCAGGCGAACTTACACTGTCAGTACTGCACCGGATCTTTCCTCCAGCAGCACTCCACGCTTCCGGTTCGGGT ACACAAGACGTGGATCTTCTTCCCTTGGCATCGAATGCTCTTGTACTTCCATGAGCGGATCTTGGGGAGCTTGATCGGAGACGATACATTCGCGATTCCG TTCTGGCCATGGGATCTGCCGGAAGGGATGATGCTGCCGGAGTTTTACCTCAACGGGTCGTTCAAGAACGAGCAGCGTGACCCGACCCATTACCCCCCGG CGGCGCGGCGGCTGATTTTTCCCGTGGCTGGGGACGGGTCCTCACAGGCGGAGCGCGCGGGGCGGGCGAGGAGCAGGTGGAGTTGA
AA sequence Show only first row Show all	>Lus10040444 pacid=23174207 polypeptide=Lus10040444 locus=Lus10040444.g ID=Lus10040444.BGIv1.0 annot-version=v1.0 MDPGKWILPLTISTILAVTLFIFSSPQLATELVGKLNGVVPDIFFGWSTPENNLQKGKLLPVQVNLSACLPTFGRPGKPVYCCPPRNILDDPIVDFQFPD PATNPVRVRRSANRLDKESIAKYEKAVEMMRSLPYSDPRSYTRQANLHCQYCTGSFLQQHSTLPVRVHKTWIFFPWHRMLLYFHERILGSLIGDDTFAIP FWPWDLPEGMMLPEFYLNGSFKNEQRDPTHYPPAARRLIFPVAGDGSSQAERAGRARSRWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040444 [exp]	0	1
AT1G18900			Pentatricopeptide repeat (PPR)...		Lus10033110 [exp]	2.6	0.9657
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10022936 [exp]	6.0	0.9643
AT5G36160			Tyrosine transaminase family p...		Lus10033659 [exp]	6.2	0.9635
					Lus10040445 [exp]	7.9	0.9769
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	9.1	0.9706
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	11.6	0.9675
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	14.4	0.9322
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	17.9	0.9691
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	19.1	0.9693
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	19.8	0.9654

Compare expression of checked genes

Lus10040444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.