Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023559 [exp] 559 / 0 ND / Lus10022836 [exp] 204 / 2e-62 ND / Lus10040440 [exp] 149 / 1e-45 ND / Lus10029057 [exp] 162 / 2e-45 ND / Lus10023556 [exp] 144 / 3e-43 ND / Lus10038309 [exp] 154 / 2e-42 ND / Lus10024121 [exp] 152 / 7e-42 ND / Lus10005392 [exp] 138 / 8e-37 ND / Lus10024122 [exp] 136 / 6e-36 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156500 [exp] 339 / 2e-113 ND / Potri.011G108300 [exp] 218 / 1e-66 ND / Potri.001G388900 [exp] 216 / 6e-66 ND / Potri.001G387900 [exp] 209 / 2e-63 ND / Potri.001G388801 [exp] 208 / 9e-63 ND / Potri.001G388300 [exp] 202 / 9e-63 ND / Potri.001G388450 [exp] 206 / 5e-62 ND / Potri.001G388100 [exp] 205 / 5e-62 ND / Potri.001G388600 [exp] 204 / 3e-61 ND / Potri.001G388200 [exp] 201 / 3e-60 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0122 [flax] [poplar] UTRA PF12143 [flax] [poplar] PPO1_KFDV Protein of unknown function (DUF_B2219) CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10040445 pacid=23174160 polypeptide=Lus10040445 locus=Lus10040445.g ID=Lus10040445.BGIv1.0 annot-version=v1.0 ATGTATAACCAGATGGTCTCCGGTGCTAAGACGGCGGAGCTATTCATGGGGTGTGCTTATAAGACCGGCGAGGGTGGTGACTGTTTCGGACCCGGGACGA TGGAGCGGGCCCCGCATAACACGATTCATAAGTGGGTCGGGTCGGCTTTCCATACCGGGAGGGAGGACATGGGGGTCTTTTACTCGGCGGCTCGCGACCC GAGTTTTTACGCTCATCACTCGAATATCGACCGGTTGTGGGAGGTTTGGATGGCGACCCACCCGGAGATGAACGACCCGGAGTTCCTCGACTCATCGATG TACTTCTATGACGAGAAGCTCCGATTGAACCGAATCCGGTTCAGGGATGTGATGGACATGGACAAGTTGAGGTACCGGTATGATGACGTGGTCAACACGT GGATGAATGCGAGGCCGAAGCCCTCAGTCGAACCTAGGTTAGCCAAGCGCGAGCTAAGGAGGAGGGAGAAAGAACAAGAGAATGTGTTGGAAATGTCGTT CGAACATTTCCAACCAACCGGTCGGTTACTCGACTCTCAAGTCACGATCCAGATGGTTCGACCTAGGGTGGTCAGGACTCGAAAGGAGAAAGCTGAATTC GAGGAGATATTGGTGGTGGAAGGGATTGATGTGAAGGCGGTGGAGTTTGTTAAGTTTGACGTCTACATCAACGTTGTTAATGGGACGGTCATGAGCCCCA AGTATCGAGAGTTTGCTGGGACGTTTACGGATATCCCAATGGGGGTATCGTTCGGGAAGAAGACGACGTTGGAGCTTGGGATTTCGGAGGTATTGGAGGA TTTGGAGGCGGATCGAGACCGATTTATATGGGTGACATTGATGCCGAGGACCAAGAGTTGTGACAAAGTTACGGTTGATGGGTTAAGCATCAAGCACACG AAGAGATGA
AA sequence Show only first row Show all	>Lus10040445 pacid=23174160 polypeptide=Lus10040445 locus=Lus10040445.g ID=Lus10040445.BGIv1.0 annot-version=v1.0 MYNQMVSGAKTAELFMGCAYKTGEGGDCFGPGTMERAPHNTIHKWVGSAFHTGREDMGVFYSAARDPSFYAHHSNIDRLWEVWMATHPEMNDPEFLDSSM YFYDEKLRLNRIRFRDVMDMDKLRYRYDDVVNTWMNARPKPSVEPRLAKRELRRREKEQENVLEMSFEHFQPTGRLLDSQVTIQMVRPRVVRTRKEKAEF EEILVVEGIDVKAVEFVKFDVYINVVNGTVMSPKYREFAGTFTDIPMGVSFGKKTTLELGISEVLEDLEADRDRFIWVTLMPRTKSCDKVTVDGLSIKHT KR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040445 [exp]	0	1
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	4.2	0.9905
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	4.5	0.9915
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	5.7	0.9868
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028509 [exp]	5.7	0.9895
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	7.1	0.9905
AT1G06000			UDP-Glycosyltransferase superf...		Lus10007971 [exp]	7.2	0.9851
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	7.4	0.9893
					Lus10040444 [exp]	7.9	0.9769
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	10.9	0.9845
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10000333 [exp]	11.3	0.9877

Compare expression of checked genes

Lus10040445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.