Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21610 180 / 2e-54 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT3G17060 117 / 2e-30 Pectin lyase-like superfamily protein (.1) AT5G19730 114 / 6e-29 Pectin lyase-like superfamily protein (.1) AT5G61680 107 / 6e-27 Pectin lyase-like superfamily protein (.1) AT5G07430 103 / 3e-25 Pectin lyase-like superfamily protein (.1) AT2G36700 102 / 6e-25 Pectin lyase-like superfamily protein (.1) AT5G47500 101 / 2e-24 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT1G05310 101 / 2e-24 Pectin lyase-like superfamily protein (.1) AT5G07420 100 / 4e-24 Pectin lyase-like superfamily protein (.1) AT5G07410 97 / 4e-23 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023560 [exp] 352 / 2e-121 AT2G21610 368 / 4e-127 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10026347 [exp] 259 / 3e-85 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10042315 [exp] 233 / 6e-75 AT2G21610 383 / 5e-133 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10000045 [exp] 216 / 5e-70 AT2G21610 214 / 8e-69 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10012942 [exp] 112 / 3e-28 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 110 / 3e-28 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 111 / 4e-28 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 105 / 6e-26 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 105 / 1e-25 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156300 [exp] 221 / 2e-70 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.018G068400 [exp] 120 / 2e-31 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G114900 [exp] 111 / 3e-28 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114266 [exp] 111 / 3e-28 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 111 / 3e-28 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 111 / 3e-28 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 111 / 3e-28 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.008G104800 [exp] 111 / 3e-28 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.006G186000 [exp] 108 / 3e-27 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.006G186100 [exp] 108 / 3e-27 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10040446 pacid=23173997 polypeptide=Lus10040446 locus=Lus10040446.g ID=Lus10040446.BGIv1.0 annot-version=v1.0 ATGCTGGCGGTTTTGTTCTCTTCAAACACGGGAAATCCTCATGTTGTGGCGTATTTTGATGAGCGACATGATGCTTCTGATGCTTCACCTACTCCTCCTC CAAAGGACTGGCCAGTGGCCAATCTGATAAGGGTGGACAATTCCGCCCTGGGGAGAGGAGATTTCAAGACGATCCAGGAAGCAATCGACTCTGTTCCTTC CAACAGCTCGGAGCTGGTCTTCATCTGGGTGCGAACGACACCATCGTTACGTGGCGCGAGATTTGAGTCTGCCACTCTGTCTGTTCTGGCTCCGTACTTT GTTCTCAATACCTTACAATCCAGAGGAGGCAAAGCTGTGTCGCTGAGGGTATCGGGAGACAAAGCTGCATTCCACGATTGTACGATCTTGTCGTACCTGG ATACACTTCTTGACTACACTGGATTGCATTACTATCGAAACTGTTACATCGAAGGAGCCACCGATTTCATCTGCGGAGATGCTTCCTCCCTCTTCGAGGC AAGCGAGATATATCTTTGTTGGTTACATTTCTGTTTCACAGAAGAGTATGAGAAACTCCGATCAAGCAACGGCTCGATAACCGCCCACGATAGGGACTCC GAGTCAGATCGAACCGGGTATATTTTCTTTCGATGCAAGTGCATATTATACGGGACTGTGTTCTACGGGGAGTACAAAAATTACGGACCTGAAGCTGATA GATGGAAGAGGGCAGCTTGGTCGAAGAAACTCGCAATCGATGAGGTTTCGCCCCTTGTGAGCAAGGAAATGATTGGTGGGAGGAGTCGGATTAGGGCTAA GCCTAAGTTCTTGAGAATTGGGTCCACAATTTTCAAAGCTGGGACTCATGGAATTCCCTCAATGACCTGA
AA sequence Show only first row Show all	>Lus10040446 pacid=23173997 polypeptide=Lus10040446 locus=Lus10040446.g ID=Lus10040446.BGIv1.0 annot-version=v1.0 MLAVLFSSNTGNPHVVAYFDERHDASDASPTPPPKDWPVANLIRVDNSALGRGDFKTIQEAIDSVPSNSSELVFIWVRTTPSLRGARFESATLSVLAPYF VLNTLQSRGGKAVSLRVSGDKAAFHDCTILSYLDTLLDYTGLHYYRNCYIEGATDFICGDASSLFEASEIYLCWLHFCFTEEYEKLRSSNGSITAHDRDS ESDRTGYIFFRCKCILYGTVFYGEYKNYGPEADRWKRAAWSKKLAIDEVSPLVSKEMIGGRSRIRAKPKFLRIGSTIFKAGTHGIPSMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10040446 [exp]	0	1
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10000045 [exp]	1.4	0.9593
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	2.0	0.9579
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019030 [exp]	2.6	0.9093
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	4.6	0.9346
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10026966 [exp]	8.4	0.8904
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039349 [exp]	9.9	0.9043
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Lus10043177 [exp]	11.3	0.8925
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10028271 [exp]	13.7	0.9205
					Lus10018556 [exp]	14.5	0.9040
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001164 [exp]	15.1	0.8791

Compare expression of checked genes

Lus10040446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.