Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35550 185 / 3e-58 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1) AT1G20700 144 / 4e-43 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT1G20710 122 / 3e-34 HD WOX13B, WOX10 WUSCHEL related homeobox 13B, WUSCHEL related homeobox 10 (.1) AT2G33880 69 / 2e-13 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT3G18010 68 / 3e-13 HD WOX1 WUSCHEL related homeobox 1 (.1) AT5G45980 68 / 4e-13 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT3G11260 64 / 2e-12 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT1G46480 64 / 4e-12 HD WOX4 WUSCHEL related homeobox 4 (.1) AT2G28610 64 / 4e-12 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT5G05770 59 / 4e-11 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023561 [exp] 344 / 4e-121 AT4G35550 201 / 3e-64 WUSCHEL related homeobox 13 (.1) Lus10016026 [exp] 129 / 1e-36 AT4G35550 149 / 4e-44 WUSCHEL related homeobox 13 (.1) Lus10012250 [exp] 132 / 2e-36 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10016569 [exp] 67 / 5e-13 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1) Lus10005282 [exp] 66 / 2e-12 AT5G45980 184 / 2e-54 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10018011 [exp] 66 / 2e-12 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10042007 [exp] 66 / 3e-12 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10040840 [exp] 64 / 5e-12 AT5G59340 110 / 7e-29 WUSCHEL related homeobox 2 (.1) Lus10028271 [exp] 63 / 1e-11 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G101800 [exp] 200 / 4e-64 AT4G35550 303 / 2e-104 WUSCHEL related homeobox 13 (.1) Potri.002G008800 [exp] 178 / 4e-56 AT4G35550 203 / 1e-65 WUSCHEL related homeobox 13 (.1) Potri.005G252800 [exp] 172 / 5e-54 AT4G35550 196 / 8e-63 WUSCHEL related homeobox 13 (.1) Potri.011G061400 [exp] 68 / 4e-13 AT2G33880 273 / 3e-89 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.004G051600 [exp] 67 / 1e-12 AT2G33880 200 / 1e-60 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.012G047700 [exp] 66 / 1e-12 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.002G124100 [exp] 65 / 2e-12 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.014G025300 [exp] 65 / 2e-12 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.015G039100 [exp] 65 / 3e-12 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.001G237900 [exp] 61 / 5e-11 AT5G59340 166 / 2e-50 WUSCHEL related homeobox 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10040447 pacid=23173955 polypeptide=Lus10040447 locus=Lus10040447.g ID=Lus10040447.BGIv1.0 annot-version=v1.0 ATGGAGTGGGATTCCGCCGTCGTTGGTGCTAATCACAAACGCCACCACGAAAGCTGCAATAACAATAATAATGGAGACCCGAATACCGCCAACAGCAGCA GCAGCCCCAATGATCTGCTGTACGTAAAGGTAATGACAGATGAACAGCTTGAGACTCTCCGGAAGCAGATCGCCGTCTACTCCACCATCTGTGAACAGCT CGTCGAGATGCACAAAACCCTCTCCTCCTCCTCCCACCAAGATTTCGCCGCGGCAGGGAGGTTGGGAAATATGTACTTGGACACGCTGATGGGCGGAGGA GGAGGCCAAAAGATGAGCGGTGGGCGACAGCGGTGGACGCCGACGCCGGTACAGCTTCAAATCCTTGAACAGATATTCGAGCAAGGAAACGGGACACCGA CGAAGCAAAAGATCAAGGAGATCACCACAGAGCTCAGCCAGCACGGCCAGATCTCGGAGACCAACGTCTACAATTGGTTCCAGAATCGCCGCGCCCGGTC TAAGCGCAAACAGCACCTTACAAATCTCCCGACTTCCGCCACCGCGGGCACGAACAATAATGATAATGCTGGTGCAACTAGTGGGGATTTGTCGTCAGAA GTGGAGACTACTACTGCTACTGAAGTTGATTCGCTTAACGATCAAGATATCATCATCCAGTTGTTGGCTCAGTCTCAGTATCAGGAAAAACAATGCTGGA ATTAG
AA sequence Show only first row Show all	>Lus10040447 pacid=23173955 polypeptide=Lus10040447 locus=Lus10040447.g ID=Lus10040447.BGIv1.0 annot-version=v1.0 MEWDSAVVGANHKRHHESCNNNNNGDPNTANSSSSPNDLLYVKVMTDEQLETLRKQIAVYSTICEQLVEMHKTLSSSSHQDFAAAGRLGNMYLDTLMGGG GGQKMSGGRQRWTPTPVQLQILEQIFEQGNGTPTKQKIKEITTELSQHGQISETNVYNWFQNRRARSKRKQHLTNLPTSATAGTNNNDNAGATSGDLSSE VETTTATEVDSLNDQDIIIQLLAQSQYQEKQCWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10040447 [exp]	0	1
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10023561 [exp]	2.4	0.8572
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10041823 [exp]	2.6	0.8564
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10027392 [exp]	2.8	0.8753
AT1G67330			Protein of unknown function (D...		Lus10011360 [exp]	6.9	0.8656
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	12.8	0.8653
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10019007 [exp]	14.4	0.8047
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	14.7	0.8606
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	15.5	0.8624
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	15.9	0.8500
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	17.9	0.8461

Compare expression of checked genes

Lus10040447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.