Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34530 171 / 7e-51 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G68920 170 / 6e-49 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 162 / 2e-47 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT2G18300 162 / 3e-47 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G07340 164 / 5e-47 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36540 154 / 8e-45 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT3G23690 156 / 1e-44 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10120 155 / 3e-44 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 154 / 5e-43 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 147 / 3e-42 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023562 [exp] 447 / 1e-159 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10014300 [exp] 163 / 8e-48 AT2G18300 171 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 163 / 1e-47 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026008 [exp] 161 / 2e-47 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 164 / 2e-46 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10029110 [exp] 164 / 2e-46 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030581 [exp] 166 / 1e-45 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 164 / 5e-45 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10002337 [exp] 156 / 4e-44 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156000 [exp] 260 / 5e-84 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 249 / 6e-80 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.014G148900 [exp] 169 / 5e-48 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 169 / 6e-48 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G235400 [exp] 167 / 2e-47 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G121850 [exp] 163 / 3e-47 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.008G113200 [exp] 166 / 9e-47 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G248500 [exp] 166 / 9e-47 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G023600 [exp] 155 / 3e-44 AT2G18300 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G146500 [exp] 151 / 2e-42 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040448 pacid=23173831 polypeptide=Lus10040448 locus=Lus10040448.g ID=Lus10040448.BGIv1.0 annot-version=v1.0 ATGAACAGAGCACATAACTCCGAGATGGATCAGGGCTTCTTCGGTGGGGACGATTTGATGAGCTGCGTCTACAACAACGGGTTGATGCGGACGGAGCTCA AACCCGACCCGGGTCTGGTCATCGACGACAACGGCTGGCCCGATTTCAGAGCTTCCGGCACTCCTCCGCCGCCGTCTCCGCCGGCCAAGAAGCGGAAATC GGCGAAATCCCAGGTGGAGGAAGGGAAGAGAATCAAAGCAAGCGGAGGAGATCAAAGCCATAGCAATTCAGGGTCGAGTTCGAAGGAGAATTCTAAGGTG ACTGATGATCAGAAGAAGGATTACATTCATGTCCGAGCTCGGCGTGGTCAGGCTACTGATAGTCACAGCTTAGCCGAAAGAGTAAGGAGGGAAAAGATCA GTGAAAGGATGAAGTATCTGCAAGACTTGGTTCCAGGTTGCAACAAGATAACTGGCAAAGCTGGGATGCTTGATGAGATCATTAACTATGTCCAATCCCT TCAACGACAAGTCGAGTTCTTGTCAATGAAACTAGCGGCTGTAAACCCGGGGGCAGGTTTCAACTTCGAAAGCTTGTTCGCGAAAGAGGCGTTTCAGGGA GGTGGTGGAAGCAACTTTGCAGGAATGGGATCATCAGATCAAATGGCAGCAGCATACCTGCAACTGAACTCACTCCAGCAACAGATAGTGGGATGCTGCA ATGGTTTCGATATCGGGATGATCAACTCTGCTACTACTGCTCCTACTACTACTGCTTCTGCTACCGATTTGGGGATCAGAAGAACAATCAGTCTTCCCAT TACCAGCCCCGAACCCGAACCCTTCATCGATTTCCCTCAAGCATCAATTTGGGATGCTGACCTTCCAAGCCTATACAACGTAGCATTTTCATCTCAATCA TTTCCACCAGGTTCAGTTGGAGGATCTAATCTGAAGATGGAGATGTGA
AA sequence Show only first row Show all	>Lus10040448 pacid=23173831 polypeptide=Lus10040448 locus=Lus10040448.g ID=Lus10040448.BGIv1.0 annot-version=v1.0 MNRAHNSEMDQGFFGGDDLMSCVYNNGLMRTELKPDPGLVIDDNGWPDFRASGTPPPPSPPAKKRKSAKSQVEEGKRIKASGGDQSHSNSGSSSKENSKV TDDQKKDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPGAGFNFESLFAKEAFQG GGGSNFAGMGSSDQMAAAYLQLNSLQQQIVGCCNGFDIGMINSATTAPTTTASATDLGIRRTISLPITSPEPEPFIDFPQASIWDADLPSLYNVAFSSQS FPPGSVGGSNLKMEM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	0	1
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	1.0	0.9791
					Lus10029254 [exp]	2.0	0.9040
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10024860 [exp]	2.2	0.8512
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039162 [exp]	2.6	0.8499
AT3G10910			RING/U-box superfamily protein...		Lus10022743 [exp]	5.5	0.8401
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	5.7	0.8644
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10000322 [exp]	5.7	0.8443
AT5G14510			ARM repeat superfamily protein...		Lus10022275 [exp]	6.3	0.8530
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10027927 [exp]	6.6	0.8172
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025110 [exp]	9.3	0.8046

Compare expression of checked genes

Lus10040448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.