Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49040 1739 / 0 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT4G15900 91 / 1e-18 PRL1 pleiotropic regulatory locus 1 (.1) AT3G49660 86 / 1e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18860 87 / 5e-17 transducin family protein / WD-40 repeat family protein (.1.2) AT5G52820 81 / 2e-15 WD-40 repeat family protein / notchless protein, putative (.1) AT5G50230 81 / 3e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 81 / 5e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 81 / 6e-15 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G16650 78 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 77 / 1e-14 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023563 [exp] 2168 / 0 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10040490 [exp] 91 / 4e-18 AT3G18860 1103 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10039636 [exp] 84 / 5e-17 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 84 / 2e-16 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10011296 [exp] 85 / 3e-16 AT3G18860 1089 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10037500 [exp] 84 / 3e-16 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10014674 [exp] 82 / 3e-16 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 81 / 4e-16 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020214 [exp] 84 / 5e-16 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049500 [exp] 1990 / 0 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.012G060800 [exp] 1964 / 0 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.007G009500 [exp] 86 / 8e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.T125104 [exp] 87 / 5e-17 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.009G112184 [exp] 87 / 5e-17 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G148500 [exp] 84 / 6e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 86 / 9e-17 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 85 / 1e-16 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 81 / 5e-16 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 80 / 2e-15 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0330 [flax] [poplar] AVL9 PF02141 [flax] [poplar] DENN DENN (AEX-3) domain CL0431 [flax] [poplar] PF PF03456 [flax] [poplar] uDENN uDENN domain CL0431 [flax] [poplar] PF03455 [flax] [poplar] dDENN dDENN domain
Representative CDS sequence Show only first row Show all	>Lus10040449 pacid=23174225 polypeptide=Lus10040449 locus=Lus10040449.g ID=Lus10040449.BGIv1.0 annot-version=v1.0 ATGGCGCCGATCTTCGAGTACTTCGTGGTGTGCGGGCTTGGCCCCGAGATTCGAACACTTGACGGGAACAAAGGCTACCATGGAGTTGGAGTTCTGTACT TGCCATCGCTTCTTGATCAGTACCCTCCGGATACTCACTTTCCTCCTCCTCCGCAGCTCCCCACTTGTGTGTTGCCAGCTGGTGTGGAAATCTTCTCTGC TGGATTTGACGTGAATGATCCTTCCTCTTCACTACGGAGCTATCCTATTGTATTAACTGAGGGTGATGGGTCGAAGATTTATGTTAGTTGCATTGCATTT CGGGATCCAGTTAGTGAGGATATTGCTGAAGCATACCGGATACCTCCAAATTCATTTGCTGATAAATGCATTTGTCTCATTTCACGGTATCCTAGTTTTG GTGTCCTTCGCAGTGCTCTTGAAGAACTATTTGCCCTCTGCTTTTCGTCAGGTGGTAGTAGCAAGCCTTTGTGGGATGTAATTGCTCACATGGTATCCAA TGTACCGTTGCCTACTCCTGGGAAAGATCGGGTGTTGTTTGCTATTGAGAATTGTCTGCTTTCAGTGGATGCTCCACCAAAAGACGGACTTCCTCATGTT GATATATCATTTCAACCACTTGTCCAATGTTTGGATGTTGACAACTTAATTCTGCTTTTTACTGCTGTTCTGCTTGAGAGGAGGATTTTGCTGCGATCTG ATAAGTATTCGCTTTTAACTCTAGTGTCAGAAGCCATATGCCATTTGATATATCCCTTTAGGTGGCAGCATGTGTACATTCCATTACTTTTTTTCAGTGG AGTAGACTATATTGATGCTCCTACACCATATATGATGGGTCTTCATTCAAGTGTCGATACATCCTACCTTGTAATGGACGGTGTGGTTGTTGTCGACCTT GAGTATAATCGAATAAGCACAACTGAGGAAATACCTCCTATCCCAGAGCCTGAATTCACTTCTCTACGTATGGACATATTGAAGTTGTTGCACCCAAATG TTGTGGGGATAGATCAGATTAAAAGTAGTCCAGTTGGTGCTTCCGAGCAATGGCCTGTTTCCAGCAACCAGCCATGGGGAGAGGAGCTAGATCTTCAACT TAGGTTAATATTCCTCAGGTTTTTTGCGTCAATCTTAGGTGGCTACCGCAATTTCATCGAAAATAGTGCAGCTCAGGCCTTCAATAATCAGGCATTTTTG AAGAAGCGCTCTAGGTCAACACATCAACCCCCAGATGCCATGGTTGGATTGTATTTCTTTGCTGCACTTGCATTTCTCGAATTCATATCTCAATTTTTGG ATACTCATGGTTTCTTGGATTTTCTGGGAAGAACTGGGAGCCTCGAAGAAAGTGACAATAATCTTTTAGACAAGTTACAAGATGCCATTGGAAGAGGTCA AAATCCCATGTCAATTCTTCCCTCATCTTCGGCAGAACCTGAATTTGTGACCATATCAGATCCAAATGGGGGATCGTCAGGATCAGGTGCAAAATATATT TATGACAGGTTTCCTACTAATATAAGATCTGAAGAGCAGGAGGAGAAGAGGAAACAGATTCTTGCTGCAGCAAGTGGAGCTTTTGAGTACATTAAAACTG CTCCCGCCTCACCATCTGTGCAAGTGGGGAAGGACACTCTTAGTCCAATGGAGAGGGCGGCAGAAAGAGAACGCATGGTCCTCGACATTCAAGTTAAGCT GCAGGGCTTATGGCTGCGCCTGTTGAAATTGGGAGCTACTGATGATCCACTTTCCTCATTTGAATATGGCACAATTCTAGCATTGATCGAGTCTGATGCA GAGGGAATTGGTGGTAGCGGCTTTGTTGAATGTATAAGCGAGCATATACACTCTGGTTGGCAGTGTCAGTTGACTGATGAGCAGTTCGTTGCAGTTAAAG AATTGCTTAAAACAGCAATTGGTCGGGCAACATCACGGAATGATCTCTCAACCATTAGAGATGCACTGGAGGTCTCTGCTGAGATGTATAAGAAAGACAG CAACAGTGTACCAGACTTTGTGCAACGCCATCTTATCTCTTTGTCTATATGGGAAGAACTAAGGTTCTGGGAAGGATACTTTGACTATCTAATGGAACGT TCTTCTGACAAGTCGGCCAATTATGCTGCTCAAGTGACAACACAGCTAATCCTAGTCTCTTCACACATGGCTGGTCTAGGAATTCCTGATACCGATGCTT GGTACATGATCGAAATGATATCAGAGAAGAATAGCATTGGATACAAGCAGCTTATCCAACTCCGGGGATTTTTAACACATATACAGCAACTTCGTATTGG GTACTGGGGAACCTCATCGATAAAGACCCCATCCATTAAATCTCTTGGATTTACTTCTCCTCGCCCTCAAGATGGCACAGATGAAAGCCAACAACCTGCC GAGGCATCTGTTGTTGGAAGAAGCTGGGTTCAGAGCATGTTTAGTAGAGATTCGTCAAGAGTAAACTCGTTTGCTCGTGTCCGTAAGTGGACTTCTGATG GTCCTTCAGATTCTTCTGCTGGTAGCCAAAAGAAGCTGCAAACAAATGTTCGAGTACTTAGAGGCCACAACGGTGCCGTGACTGCTTTGCACTGTGTGAC AAGAAGAGAGGTCTGGGATTTGGTGGGAGACCGTGAAGATGCCGGTTTCTTTATTAGTGGAAGCACAGACTCCTTGGTCAAAATCTGGGATCCTAGCATC CGTGGTTCTGAACTCCGAGCAACTTTGAAAGGGCATAAAAAAACTGTTCGTGCTATAAGTTCCGATCGAGGGAAGGTAGTATCAGGATCTGATGACCAGA ATGTTATTGTGTGGGATAAACAAACGTCACAGCTTCTTGAAGAATTGAAGGGCCACGAAGCTCAGGTCAGCTGTGTCCGCATGCTGTCAGGTGAGCGAGT ACTCACCGCAGCTCATGATGGAACCGTGAAGATGTGGGATGTTAGAACGGACACCTGCGTTGCAACAGTAGGCCGTTGCTCTAGTGCAGTCATGTGCATG GAATACGACGACTCCACCGGTATCCTTGCTGCTGCTGGCAGAGACGCGATTGCAAATGTCTGGGATATCCGAGCCGGAAAGCAAATGCATAAGCTCACAG GCCACACAAAATGGATTCGGCGGTCTGCTAGAATGGTTGGAGACACTTTGGTAACAGGTAGTGATGATTGGACTGCCAGAGTGTGGTCTGTCTCGCGAGG AACGTGCGATGCCGTTCTAGCCTGTCATGCCGGGCCAATCTTGTGTGTGGAGTACTCTGAAGCAGATCGAGGAATTATAACAGGTTCAACCGACGGGCTA TTACGATTCTGGGAAAATGAGGAAGGAGGCATAAAATGCACGAAGAACGTTACGATCCATACAGCGTCCATACTGTCCATCAACGCTGGCGAAAACTGGC TGGGAGTAGGAGCAGCTGACAACTCCATGTCCCTCTTCAACCGGCCTCAAGATCGGCTCGGTGCCATAGGTCCTGGTTCGGGTTCGAAACTGCCCGGTTG GCAACTTTACAGGACGCCCCAAAAGAACGTCGCCATGGTGCGATGTGTGGCATCGGATCTCGAACGGAAGAGGATCTGCAGCGGTGGCCGAAACGGGGTG CTGAGGTTATGGGAAGCAACCATCAACATATAA
AA sequence Show only first row Show all	>Lus10040449 pacid=23174225 polypeptide=Lus10040449 locus=Lus10040449.g ID=Lus10040449.BGIv1.0 annot-version=v1.0 MAPIFEYFVVCGLGPEIRTLDGNKGYHGVGVLYLPSLLDQYPPDTHFPPPPQLPTCVLPAGVEIFSAGFDVNDPSSSLRSYPIVLTEGDGSKIYVSCIAF RDPVSEDIAEAYRIPPNSFADKCICLISRYPSFGVLRSALEELFALCFSSGGSSKPLWDVIAHMVSNVPLPTPGKDRVLFAIENCLLSVDAPPKDGLPHV DISFQPLVQCLDVDNLILLFTAVLLERRILLRSDKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSSVDTSYLVMDGVVVVDL EYNRISTTEEIPPIPEPEFTSLRMDILKLLHPNVVGIDQIKSSPVGASEQWPVSSNQPWGEELDLQLRLIFLRFFASILGGYRNFIENSAAQAFNNQAFL KKRSRSTHQPPDAMVGLYFFAALAFLEFISQFLDTHGFLDFLGRTGSLEESDNNLLDKLQDAIGRGQNPMSILPSSSAEPEFVTISDPNGGSSGSGAKYI YDRFPTNIRSEEQEEKRKQILAAASGAFEYIKTAPASPSVQVGKDTLSPMERAAERERMVLDIQVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDA EGIGGSGFVECISEHIHSGWQCQLTDEQFVAVKELLKTAIGRATSRNDLSTIRDALEVSAEMYKKDSNSVPDFVQRHLISLSIWEELRFWEGYFDYLMER SSDKSANYAAQVTTQLILVSSHMAGLGIPDTDAWYMIEMISEKNSIGYKQLIQLRGFLTHIQQLRIGYWGTSSIKTPSIKSLGFTSPRPQDGTDESQQPA EASVVGRSWVQSMFSRDSSRVNSFARVRKWTSDGPSDSSAGSQKKLQTNVRVLRGHNGAVTALHCVTRREVWDLVGDREDAGFFISGSTDSLVKIWDPSI RGSELRATLKGHKKTVRAISSDRGKVVSGSDDQNVIVWDKQTSQLLEELKGHEAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVMCM EYDDSTGILAAAGRDAIANVWDIRAGKQMHKLTGHTKWIRRSARMVGDTLVTGSDDWTARVWSVSRGTCDAVLACHAGPILCVEYSEADRGIITGSTDGL LRFWENEEGGIKCTKNVTIHTASILSINAGENWLGVGAADNSMSLFNRPQDRLGAIGPGSGSKLPGWQLYRTPQKNVAMVRCVASDLERKRICSGGRNGV LRLWEATINI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10040449 [exp]	0	1
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	1.7	0.9359
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	3.2	0.9173
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	3.9	0.9130
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	7.0	0.8973
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10035450 [exp]	7.5	0.8918
AT5G22780			Adaptor protein complex AP-2, ...		Lus10019520 [exp]	9.5	0.8865
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014599 [exp]	11.0	0.8944
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	13.9	0.9003
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030848 [exp]	14.4	0.9076
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	14.7	0.9057

Compare expression of checked genes

Lus10040449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.