Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75250 97 / 7e-28 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) AT2G21650 90 / 4e-25 MYB RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) AT4G39250 86 / 1e-23 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT1G19510 85 / 5e-23 MYB RSM4, ATRL5 RADIALIS-LIKE SANT/MYB 4, RAD-like 5 (.1) AT2G18328 77 / 2e-20 MYB ATRL4 RAD-like 4 (.1) AT3G11280 72 / 1e-16 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G58900 72 / 1e-16 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 71 / 4e-16 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT4G36570 66 / 5e-16 MYB ATRL3 RAD-like 3 (.1) AT5G05790 70 / 7e-16 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023564 [exp] 157 / 4e-52 AT1G75250 101 / 2e-29 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10010831 [exp] 102 / 4e-30 AT1G75250 108 / 6e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10033212 [exp] 102 / 2e-29 AT1G75250 107 / 2e-31 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10023568 [exp] 100 / 2e-29 AT4G39250 123 / 5e-38 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10040453 [exp] 97 / 4e-28 AT2G21650 115 / 4e-35 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) Lus10041752 [exp] 96 / 2e-27 AT1G75250 103 / 2e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10014301 [exp] 95 / 3e-27 AT1G75250 102 / 5e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10026009 [exp] 94 / 5e-27 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10007152 [exp] 94 / 8e-27 AT1G75250 113 / 3e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155866 [exp] 109 / 1e-32 AT1G75250 113 / 5e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G117200 [exp] 108 / 1e-32 AT4G39250 109 / 1e-32 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.007G023800 [exp] 107 / 4e-32 AT1G75250 116 / 2e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G122200 [exp] 102 / 3e-30 AT4G39250 112 / 3e-34 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.002G035000 [exp] 98 / 3e-28 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G228000 [exp] 95 / 3e-27 AT1G75250 115 / 5e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.004G155400 [exp] 95 / 4e-27 AT1G75250 124 / 4e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G116600 [exp] 91 / 1e-25 AT4G39250 120 / 4e-37 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.002G260000 [exp] 86 / 1e-23 AT1G75250 108 / 3e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G025100 [exp] 84 / 7e-23 AT1G75250 91 / 1e-25 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040450 pacid=23173980 polypeptide=Lus10040450 locus=Lus10040450.g ID=Lus10040450.BGIv1.0 annot-version=v1.0 ATGTCTTCAAACAATGGAGTCGCGAGTACTTCATGGACGGCTAGGGAGAACAAGCTGTTCGAGGAGGCTCTGGCGCTGCACGACAAGGACACCCCTGACC GTTGGATCAACGTGGCCAATGCCGTTGGCGGCGGGAAGTCCGCGGAGGAAGTGAAGCTGCAGTTTGACATCCTGGTTGCGGATGTTGAACGTATCGAATC CGGTCGGGTTCCGATCCCTAAGTACAAGGCCGCTGCTCCGAAGCTTGCATCTCGCTTCTAG
AA sequence Show only first row Show all	>Lus10040450 pacid=23173980 polypeptide=Lus10040450 locus=Lus10040450.g ID=Lus10040450.BGIv1.0 annot-version=v1.0 MSSNNGVASTSWTARENKLFEEALALHDKDTPDRWINVANAVGGGKSAEEVKLQFDILVADVERIESGRVPIPKYKAAAPKLASRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10040450 [exp]	0	1
					Lus10009804 [exp]	7.5	0.6516
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10012746 [exp]	16.2	0.6344
					Lus10003766 [exp]	19.3	0.6245
AT2G37010		ATNAP12	non-intrinsic ABC protein 12 (...		Lus10023199 [exp]	20.3	0.6335
					Lus10007903 [exp]	28.1	0.6113
AT5G42905			Polynucleotidyl transferase, r...		Lus10034950 [exp]	42.0	0.6095
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10014730 [exp]	53.8	0.5696
AT2G37880			Protein of unknown function, D...		Lus10021495 [exp]	64.9	0.5694
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10016368 [exp]	83.6	0.5456
AT4G31880			unknown protein		Lus10002307 [exp]	88.9	0.5621

Compare expression of checked genes

Lus10040450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.