Plant FIBer expression Database

Lus10040451 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57150 570 / 0 ATNAP57, ATCBF5, NAP57 homologue of NAP57 (.1)
AT5G14460 95 / 1e-20 Pseudouridine synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023565
[exp]
692 / 0 AT3G57150 743 / 0.0 homologue of NAP57 (.1)
Lus10035418
[exp]
640 / 0 AT3G57150 647 / 0.0 homologue of NAP57 (.1)
Lus10022284
[exp]
96 / 4e-21 AT5G14460 551 / 0.0 Pseudouridine synthase family protein (.1)
Lus10003661
[exp]
96 / 5e-21 AT5G14460 628 / 0.0 Pseudouridine synthase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G044100
[exp]
632 / 0 AT3G57150 729 / 0.0 homologue of NAP57 (.1)
Potri.016G041200
[exp]
626 / 0 AT3G57150 741 / 0.0 homologue of NAP57 (.1)
Potri.001G343100
[exp]
94 / 4e-20 AT5G14460 585 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0649 PseudoU_synth PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
CL0178 PUA PF01472 PUA PUA domain
Representative CDS sequence
>Lus10040451 pacid=23174201 polypeptide=Lus10040451 locus=Lus10040451.g ID=Lus10040451.BGIv1.0 annot-version=v1.0
ATGGCCGAAGTTGAAGTCTCCCGCTCCGATAAGAAGAAGCACAAGAAGAAGACCGGTTCAGCCGACCCTGACACCGACGCTGACCCCATGTCTGCTGCCG
CCGTAAATGGCGGCGCATACTTTAACACACCCCCGAGCTTCTCGCCCTCGATCGCACGGATCAAACGGATCCTCCGATCGGAGAAAACCGGCCACAGCGG
GACACTCGACCCTAAAGTCACAGGTAACCTAATTGTTTGCATCGATAGAGCTACTCGTCTGGTTAAGTCCCAGCAAGGTGCAGGGAAAGAGTACGTCTGT
GTTGCCAGGCTGCACGATAAGGTTCCCGATGTCGCCAAAGTCGGCAGAGCTCTGGAGACGCTGACCGGAGCCGTCTTCCAAAGGCCGCCATTGATCTCTG
CAGTCAAAAGGCAGCTTAGGATCAGAACAGTTTACGAGAGTAAGCTGCTGGAGTATGACGTGGATAGGCATTTGGTTGTTTTCTGGATTTCCTGTGAAGC
TGGTACTTATGTGAGGACTATGTGTGTTCATTTGGGGCTTGTTCTTGGCGTCGGTGCTCATATGCAGGAGCTCAGAAGGGTTAGGTCTGGAATTTTAGGC
GAGAAAGATAACATGGTGACAATGCACGATGTTATGGATGCTCAGTGGGCTTATGATAACTATAGAGATGAATCTTACTTGAGGAGGGTGATTATGCCGT
TGGAAGTTCTTTTAACTAGCTATAAGAGGCTGGTTGTGAAAGATTCTGCTGTGAATGCGATCTGCTATGGTGCGAAGCTGATGATTCCGGGGCTGTTGAG
GTTCGAGAACGATGTTGAAGTCGGGGAGGAGGTTGTTCTGATGACGACAAAGGGTGAGGCGATTGCTCTAGGGATTGCTGAGATGACTACTGCTGTTATG
GCTACCTGTGATCATGGGGGGGTGGCTAAGAACAAGAGGGTGGTTATGGATCGGGATACTTATCCGAGGAAATGGGGGTTAGGGCCGAGGGCTTCAATGA
AGAAGAAGCTGATTTCGGAGGGGAAATTGGATAAGCATGGGAAGCCAAATGAGAATACGCCTCAAGAATGGGCGAGGAACTTGGTTTTACCCACTGGTGG
AGACTCTATGGTTGCTGCTGCTGCAGCTACGGCTACCCCTGTTGCTGAACCAGTGGTAGAGCCGAAAGTTGAGGACGAAATGGGAACTAATAAGAAGAAG
AAGAACAAGCGCAAGCACGAGGACGAGGAAATGCCCGATGCTGATGCTGAGGCTACGGCCAAGAAGGCTAAGATTGAGAATGTGGAGGGTGAGGAAACTC
CCAAGGCGAAGAAATCGAAAGAAGAAGATGTCGATACAACAACGGAGAAAAAGAAGAAGAAGGACAAGGAGGGTGAAGAGGCTGCTTCGCCCGAGACGGG
AAAGTCGAAGAAGAAGAAGAAGAAGGAGAAGGAGGAGGCTGAGAAGGCAGCTGCAGCCATCGAAGAGGCTGATAAAAGTGAAAAGAAGAAGAAGAAGAAG
AAAAAGGACAAAGATGGTGAAGAGTAG
AA sequence
>Lus10040451 pacid=23174201 polypeptide=Lus10040451 locus=Lus10040451.g ID=Lus10040451.BGIv1.0 annot-version=v1.0
MAEVEVSRSDKKKHKKKTGSADPDTDADPMSAAAVNGGAYFNTPPSFSPSIARIKRILRSEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC
VARLHDKVPDVAKVGRALETLTGAVFQRPPLISAVKRQLRIRTVYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVRSGILG
EKDNMVTMHDVMDAQWAYDNYRDESYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEVGEEVVLMTTKGEAIALGIAEMTTAVM
ATCDHGGVAKNKRVVMDRDTYPRKWGLGPRASMKKKLISEGKLDKHGKPNENTPQEWARNLVLPTGGDSMVAAAAATATPVAEPVVEPKVEDEMGTNKKK
KNKRKHEDEEMPDADAEATAKKAKIENVEGEETPKAKKSKEEDVDTTTEKKKKKDKEGEEAASPETGKSKKKKKKEKEEAEKAAAAIEEADKSEKKKKKK
KKDKDGEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Lus10040451
[exp]
0 1
AT5G61030 GR-RBP3 glycine-rich RNA-binding prote... Lus10034685
[exp]
1.0 0.9724
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Lus10039636
[exp]
2.0 0.9537
AT1G07510 FTSH10 FTSH protease 10 (.1) Lus10016516
[exp]
3.0 0.9416
AT2G15000 unknown protein Lus10026596
[exp]
6.0 0.9391
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Lus10023565
[exp]
6.9 0.9540
AT3G01790 Ribosomal protein L13 family p... Lus10032063
[exp]
7.1 0.9400
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10010429
[exp]
7.7 0.9549
AT5G02820 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTERO... Lus10015052
[exp]
11.9 0.9165
AT4G39880 Ribosomal protein L23/L15e fam... Lus10041700
[exp]
12.0 0.9484
AT5G57290 60S acidic ribosomal protein f... Lus10010890
[exp]
14.3 0.9340

Lus10040451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.