Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03220 57 / 6e-09 Protein with RNI-like/FBD-like domains (.1) AT5G02930 56 / 1e-08 F-box/RNI-like superfamily protein (.1) AT1G78840 53 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02700 52 / 3e-07 F-box/RNI-like superfamily protein (.1) AT3G28410 52 / 4e-07 F-box/RNI-like superfamily protein (.1) AT5G56820 50 / 1e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G26350 50 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G60610 49 / 2e-06 F-box/RNI-like superfamily protein (.1) AT5G38570 49 / 2e-06 F-box/RNI-like superfamily protein (.1) AT5G02920 49 / 2e-06 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006513 [exp] 203 / 2e-62 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10027244 [exp] 195 / 5e-59 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10027258 [exp] 182 / 3e-55 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10035564 [exp] 160 / 2e-46 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10038935 [exp] 151 / 7e-43 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10023567 [exp] 145 / 4e-42 AT4G03220 59 / 3e-10 Protein with RNI-like/FBD-like domains (.1) Lus10024702 [exp] 147 / 2e-41 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10032255 [exp] 145 / 4e-40 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10029433 [exp] 142 / 6e-39 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 75 / 9e-15 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G024300 [exp] 61 / 5e-10 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G337200 [exp] 57 / 4e-09 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 57 / 7e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104300 [exp] 56 / 2e-08 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 51 / 6e-07 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 49 / 2e-06 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G024600 [exp] 47 / 2e-05 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104200 [exp] 44 / 0.0001 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 44 / 0.0001 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040452 pacid=23173904 polypeptide=Lus10040452 locus=Lus10040452.g ID=Lus10040452.BGIv1.0 annot-version=v1.0 ATGAGCCTGGCCCAACAATCAAATGATGTTCCTGACAGTATGTTATATCACATCCTTTTTTTCGTCGACACTAGATCTTCGGTTCGAACCAACATTCTGT CTAGGAGGTGGATATTTGTATGGAAATATGTTATGGTTCTCGATTTCAATCGTAATCCGGGTTTGGACCGGCAGGTGAATCGAGTTCTTTCCCTCCGTTC TGATAGTAGCAACAACATTAGAGTTGCAATCGTCTTGTTCAAGGTAGAACGAATGATGGATCTGTTTGGTAGGATCATGAAATACGCTGCTTCTCATGCC GTTCAAGAGCTATCTATTCGTATTGACTATCTCCCAAGTTATAACTTCTGTAGATTAGTATACGCCTGCTATCAATCTCTAAAAGTTCTGGAGTTGGAGC TGGTAGACATCGGAAGCACTGAAATTAGGTTGTTTTCTAGTTTGCAACGGCTTGAATATCTTACTCTGACCACCGAATGCAACTTTTTCTTTGAGGATGC AACACATAATGCTTTTACTACTATTCTAATAGTAACTGCACCACGACTGCTCAACCTGGAGATTGTTTGTCCAAGACTCGACAGTCTTGAGATGGACGCT CCCAAGCTCCAATCTTTCAGTCTCGAGATTGATTCTTCATATGATATACTACCTCAAGTTTCCAAGTCGAAACTTCCTTCTCTTCACCGTGCAAACATTG AGTTAATGGTTCAGAACGTATTTAGGAGAAAGTTTTTGATTCGACGGTCAGGTATCAATAGGCTAAGTGATCTTCATGACAGCATTTTGCATCACATCCT CTCTTTGTCGACACTAGATCTTCGGTTCGAACCAACATTTTATCTAGGAGGTGGATTTCTATATGGAAATATGTTCCTGTTCTCACTTTCCGTAAGAGCA CAACCAGAAGTGATCTGCATTTCGAGCGGCAGGTGGATCAAGTTCTTTCCCTCCGCTGTGAAAGCAGTAGCGTCAGCAGAGTTACAAATTCTCCCAGCAG GAAGAACGGATGATGAATCTGTTTGA
AA sequence Show only first row Show all	>Lus10040452 pacid=23173904 polypeptide=Lus10040452 locus=Lus10040452.g ID=Lus10040452.BGIv1.0 annot-version=v1.0 MSLAQQSNDVPDSMLYHILFFVDTRSSVRTNILSRRWIFVWKYVMVLDFNRNPGLDRQVNRVLSLRSDSSNNIRVAIVLFKVERMMDLFGRIMKYAASHA VQELSIRIDYLPSYNFCRLVYACYQSLKVLELELVDIGSTEIRLFSSLQRLEYLTLTTECNFFFEDATHNAFTTILIVTAPRLLNLEIVCPRLDSLEMDA PKLQSFSLEIDSSYDILPQVSKSKLPSLHRANIELMVQNVFRRKFLIRRSGINRLSDLHDSILHHILSLSTLDLRFEPTFYLGGGFLYGNMFLFSLSVRA QPEVICISSGRWIKFFPSAVKAVASAELQILPAGRTDDESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02930			F-box/RNI-like superfamily pro...		Lus10040452 [exp]	0	1
AT4G29035			Plant self-incompatibility pro...		Lus10011895 [exp]	4.4	0.8957
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	6.5	0.8930
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	7.9	0.8912
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	9.4	0.8840
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10037004 [exp]	10.2	0.8010
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	10.5	0.8840
AT3G02280			Flavodoxin family protein (.1)		Lus10033550 [exp]	11.2	0.6373
AT3G15280			unknown protein		Lus10005404 [exp]	11.5	0.8146
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	11.5	0.8840
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	12.4	0.8816

Compare expression of checked genes

Lus10040452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.