Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21660 147 / 6e-45 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G39260 131 / 9e-40 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT3G26420 110 / 2e-29 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT4G13850 96 / 2e-25 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G23830 94 / 2e-24 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G24770 86 / 6e-20 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT4G13860 81 / 7e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37220 86 / 8e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 85 / 1e-19 CP31B chloroplast RNA-binding protein 31B (.1) AT5G61030 85 / 1e-19 GR-RBP3 glycine-rich RNA-binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023569 [exp] 167 / 1e-52 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026344 [exp] 154 / 7e-48 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 154 / 7e-48 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026343 [exp] 148 / 3e-45 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10042321 [exp] 132 / 7e-39 AT2G21660 121 / 2e-36 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10022551 [exp] 96 / 7e-25 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 94 / 2e-24 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10021154 [exp] 96 / 7e-24 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10043158 [exp] 92 / 1e-23 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155300 [exp] 149 / 2e-45 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 147 / 9e-45 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G207100 [exp] 115 / 1e-31 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.017G059000 [exp] 96 / 3e-25 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 92 / 2e-23 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G340800 [exp] 94 / 6e-23 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G319800 [exp] 87 / 1e-21 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.015G057400 [exp] 88 / 4e-21 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.012G061600 [exp] 88 / 5e-21 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.015G086500 [exp] 87 / 4e-20 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10040454 pacid=23174125 polypeptide=Lus10040454 locus=Lus10040454.g ID=Lus10040454.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCCGATGTTGAATTCAGGTGCTTCGTTGGTGGCCTAGCATGGGCTACCACCGACGAGGCACTCAACGAGGCCTTCAGCACCTTTGGCGATG TCGTCGAATCGAAGGTGATCAACGACCGTGAGACTGGAAGATCCCGCGGATTCGGGTTCGTGACTTTCAACAACGAGAAGTCGATGAAGGACGCCATCGA AGGGATGAACGGACAGAACCTTGACGGCCGTAACATCACAGTCAATGAGGCTCAATCACGTGGCAGCTCAGGAGGAGGCGGTGGTGGCCGTGGATACGGC GGTGGACGCAGAGAAGGTGGATACGGAGGCGGCGGTGGCCGATCGTATGGAAGCCGTGAAGGAGGTGGTGGCTACGGAGGCGGTGGGGATACGGCGGTGG ACGCAGAGAAGGTGGATACGGAGGCGGCGGTGGCCGATCGTATGGAAGCCGTGAAGGGGGTGGTGGCTACGGAGGCGGTGGCTACGGAGGTAGCCGTGAC CGCAGTGAAGGAGGCTATGGTGGTGGTTCCCGTTACTCTTCCAGGAGTGGCGGTGACTCCGACGGTGGTAGCTGGAGGAATTAGAGAATGGATCAGATCC GATGATCTCGTCCAGTTATCCTGTTTTTGCATTATCGAGTGTTCGCTTTAG
AA sequence Show only first row Show all	>Lus10040454 pacid=23174125 polypeptide=Lus10040454 locus=Lus10040454.g ID=Lus10040454.BGIv1.0 annot-version=v1.0 MASADVEFRCFVGGLAWATTDEALNEAFSTFGDVVESKVINDRETGRSRGFGFVTFNNEKSMKDAIEGMNGQNLDGRNITVNEAQSRGSSGGGGGGRGYG GGRREGGYGGGGGRSYGSREGGGGYGGGGDTAVDAEKVDTEAAVADRMEAVKGVVATEAVATEVAVTAVKEAMVVVPVTLPGVAVTPTVVAGGIREWIRS DDLVQLSCFCIIECSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10040454 [exp]	0	1
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10023569 [exp]	1.0	0.9441
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Lus10040667 [exp]	1.4	0.8862
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	1.7	0.8803
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042320 [exp]	4.5	0.7617
AT3G47570			Leucine-rich repeat protein ki...		Lus10009394 [exp]	8.5	0.7187
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	13.0	0.7234
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	13.6	0.7330
AT4G18425			Protein of unknown function (D...		Lus10013970 [exp]	15.9	0.7081
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Lus10018237 [exp]	18.5	0.7304
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	21.8	0.7295

Compare expression of checked genes

Lus10040454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.