Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16250 803 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G39270 653 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT4G20140 179 / 6e-46 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G24240 178 / 1e-45 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G33170 177 / 3e-45 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24550 172 / 1e-44 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G63930 172 / 1e-43 Leucine-rich repeat protein kinase family protein (.1) AT1G55610 171 / 2e-43 BRL1 BRI1 like (.1.2) AT5G53890 167 / 5e-42 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT1G28440 166 / 7e-42 HSL1 HAESA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023570 [exp] 1369 / 0 AT2G16250 920 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010823 [exp] 683 / 0 AT2G16250 717 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011756 [exp] 174 / 2e-44 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10005491 [exp] 172 / 1e-43 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10011098 [exp] 168 / 2e-43 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10028612 [exp] 171 / 4e-43 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10013968 [exp] 169 / 1e-42 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 168 / 2e-42 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018911 [exp] 164 / 4e-41 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155100 [exp] 931 / 0 AT2G16250 921 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.009G116300 [exp] 904 / 0 AT2G16250 886 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G196600 [exp] 765 / 0 AT2G16250 741 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G260100 [exp] 727 / 0 AT2G16250 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 184 / 1e-47 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G116900 [exp] 181 / 1e-46 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.003G175700 [exp] 177 / 3e-45 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.014G143100 [exp] 167 / 4e-45 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.001G472900 [exp] 175 / 1e-44 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.001G052500 [exp] 175 / 1e-44 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10040455 pacid=23173849 polypeptide=Lus10040455 locus=Lus10040455.g ID=Lus10040455.BGIv1.0 annot-version=v1.0 ATGAATCGTGCAAGAGTAGGAGAGTGTTCTCTCGGAGAGAGGAAACGTAAAATAAAAAAGCTTAGCTGGCACGAGAGAGCGGGACACCCGGGAAAGTCAA AGGTCAAACCACCGCCGTCCTCCGCCGCACATTTCTTCCCCGGCGGCCGCCCGCAAACCCTCGTCCTTCTTTCTTCTTCCCTCAGTCCCCCCCAACAGGA AAACACTCAGAAGCTGAGGTCTGATTTGGGCATAAGGAGTAGAGAATGGCCTAGAAAGTCGGAGCCTTGTCAATCTTGGGCTGGCGTTACATGTGTCAAT GGCACTGTTGCTGAGATCAACATTTCGGGGTTTAAAAGGACTAGATTGGGTTCACTGAACCCAAAATTTGCAGTGGAGGCACTTGCCAATTTCACCAAGT TGACTTCTTTCAATGCTTCCAAGTTCTTGCTCCCTGGCTCAATCCCTGATTCCTTTGGTCAAATGATGGTGAGTTCTACTTCTCTCCAGATTCTTGATCT CAGCTCTTGTGATATAACGAATGCTGTTCCTTCAAGTTTAGGGGATTTGAGTGGCTTGCGCCAGCTTCATTTAGGTGGTAACCGGTTAACTGGCATTATA CCTTCCAGTTTGGGTCAGTTGCTGCAGCTTTCTGTGCTTAATCTCTCCAGGAATCTCTTTACTGGCTCCATACCTCCTAGCTTTGGTAACTTGGTGAATC TAACAAGTCTTGATATGTCGTCCAACTTCTTGGCTGGTTCGATCCCTCCCATTGGTGGGAGCGCACGTTCGAGGCTTGTTTACTTGAATCTTTCGAACAA TAGCTTGTCGTCTTTTCAGTTCGGGAGCCTTGTTGGATTGGTTGACCTTGATCTCACTAGCAATTCGCTAACCGGATCCTTGCCAGTCGAGTTAAGCGGG ATGAGTAGTCTAAAAAGCTTGCTGCTTGGTAACAACTTGTTTGGTGGACCTTTGCCATCTGGTTTGTTTGTTGCCAATCAAACTCAGTTGCACAATGTGG TTCTGAGCAATAATAATTTCATCGGTTCTGTACCGGGGGAATTGCTGTCGATTCCTGGATTGCGGTTGTTGGATATATCCAGTAACAACTTTACCGGGAT GCTCTTGGATCGTAGTAACTCAAATGTGAATGCGAGCACTACTGCTGCAGCAGTACTGAACATTTCTGGAAACCAGTTCTATGGAGGACTTGGACCTGTG CTGAGAAGGTTCAGTTTCGTTGACCTGTCCGGGAATTATTTTCAAGGACCAGTTCCTAACTATGTGATTAGCAATGCATCTCTCGGTAGAAACTGTCTTC GTAATGTCACGAATCAGAAGAGCTTGTTCGACTGTTCGTCGTTTTACTCCAGTCTCGGGTTGACTTTCGATAATTTTGGACTCCCGAATTCGACTCAACC TGGTGTTAGGAAGAAGAGCAAGAGAAACCTTATCATATTGGTAAGTGTTCTTGGAGGGATCGGACTCATGCTGCTGATATTTTTCATTGTGGTTTTGGTA TTTTGCTTGCGTAAGAGGGACACTTCGAATCAAAGAGGGGTAGCTGTCGAACCGGCTCCAACAGGGACAGGGATGGTTCCACCGCCTCCGGAGGCATCGA TTAACTTCTCGATATTGGGAGATACGTTCACGTATCAGCAGCTGCTTCAAGCTACAGGCGAATTCAACGATGCAAACCTCATCAAACGTGGCCACTCCGG AGATATCTTCCGAGGGATATTGGAGAACGGAACCCTTGTGGTGATAAAAAGGATTGATCTTGGCTCGATCAAGAAGGAATCGTATCTGGTGGAGCTTGAT TTCTTCAGTAAAGTTGCGCATGCTAAAGTGGTTCCACTTTTAGGACATTGCTTAGAGAATGAGAATGAGAAGTTATTGGTCTACAAGTACATGCCGAATG GGGATTTGGCGAGTTCGTTGTTCAAGAAAACTAGCTCGGAAGATGATACCTTGAAGTCGTTGGATTGGATTACGAGGTTGAAAATCGCCATTGGTGCTGC AGAAGCTCTTTCTTGCCTGCATCATGAATGTACACCGCCCATAGTGCACAGAGATATTCAAGCGAGCAGCATATTACTCGACGACAAATTCGAAGTAAGG TTAGGGAGTTTGAGTGAGGTATGTGCTCAAGAAGGGGATGCTCATCAAAGCAGGATCACCAGGTTACTGCGATTACCGTCTTCAGATCAAGGAACTTCCG CTCAACCGTCAGCTACGTGCACCTACGACGTGTACTGCTTCGGCAAGGTCCTCCTCGAGCTAGTGACAGGAAACATCGGCATCAGCGCAGCCAACAACGC CCAACTGAAAGAATACCTTGACCAGATCATACCGCACATCAGCCTGTACGAGAAGGAACTCGTTGTCAAAATCGTGGACCCGTCTCTAATCATCGACGAA GACCTGCTGGAGGAAGTTTGGGCTATGGCCATCGTAGCAAGGTCGTGTCTGAATCCGAAACCCTCGAGGAGGCCGCTAATGAGATATATCCTCAAGGCGT TGGAGAATCCTCTCAAAGTAGTGAGGGAAGAAGCCGTGGATTCATCAGCAAGGCTTAGGACAACATCATCTCGAGGATCGTGGAATGCTGCTGTGTTTAG TAGCTGGCGACAGTCCTCCGATGTGACAGTGGTCCAGCCCGGGCAACCTGGTGGGGTCGGTTCGAGCAGCCGGCCTGAAGGGGTAGGACGAGGAGGGAGT AGTGGTCTTAAACAGTCAGGGACATCGAGTGGTGGGGGGCGAAACGGGAGTGGTTCTTCGTCTTCGCATAGGCGGGGTTCGAGGGATATCTTCCCAGAAC CGGGTTATGAGCAAGATGTAGAGAGACAACTACAACACGATTAG
AA sequence Show only first row Show all	>Lus10040455 pacid=23173849 polypeptide=Lus10040455 locus=Lus10040455.g ID=Lus10040455.BGIv1.0 annot-version=v1.0 MNRARVGECSLGERKRKIKKLSWHERAGHPGKSKVKPPPSSAAHFFPGGRPQTLVLLSSSLSPPQQENTQKLRSDLGIRSREWPRKSEPCQSWAGVTCVN GTVAEINISGFKRTRLGSLNPKFAVEALANFTKLTSFNASKFLLPGSIPDSFGQMMVSSTSLQILDLSSCDITNAVPSSLGDLSGLRQLHLGGNRLTGII PSSLGQLLQLSVLNLSRNLFTGSIPPSFGNLVNLTSLDMSSNFLAGSIPPIGGSARSRLVYLNLSNNSLSSFQFGSLVGLVDLDLTSNSLTGSLPVELSG MSSLKSLLLGNNLFGGPLPSGLFVANQTQLHNVVLSNNNFIGSVPGELLSIPGLRLLDISSNNFTGMLLDRSNSNVNASTTAAAVLNISGNQFYGGLGPV LRRFSFVDLSGNYFQGPVPNYVISNASLGRNCLRNVTNQKSLFDCSSFYSSLGLTFDNFGLPNSTQPGVRKKSKRNLIILVSVLGGIGLMLLIFFIVVLV FCLRKRDTSNQRGVAVEPAPTGTGMVPPPPEASINFSILGDTFTYQQLLQATGEFNDANLIKRGHSGDIFRGILENGTLVVIKRIDLGSIKKESYLVELD FFSKVAHAKVVPLLGHCLENENEKLLVYKYMPNGDLASSLFKKTSSEDDTLKSLDWITRLKIAIGAAEALSCLHHECTPPIVHRDIQASSILLDDKFEVR LGSLSEVCAQEGDAHQSRITRLLRLPSSDQGTSAQPSATCTYDVYCFGKVLLELVTGNIGISAANNAQLKEYLDQIIPHISLYEKELVVKIVDPSLIIDE DLLEEVWAMAIVARSCLNPKPSRRPLMRYILKALENPLKVVREEAVDSSARLRTTSSRGSWNAAVFSSWRQSSDVTVVQPGQPGGVGSSSRPEGVGRGGS SGLKQSGTSSGGGRNGSGSSSSHRRGSRDIFPEPGYEQDVERQLQHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16250			Leucine-rich repeat protein ki...		Lus10040455 [exp]	0	1
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	2.4	0.9513
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10028712 [exp]	2.4	0.9380
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	3.5	0.9340
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	6.5	0.9308
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	11.0	0.9187
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	14.0	0.9314
AT5G17010			Major facilitator superfamily ...		Lus10009573 [exp]	14.1	0.9211
AT1G28120			unknown protein		Lus10026630 [exp]	14.1	0.9323
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	14.4	0.9214
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	15.7	0.9170

Compare expression of checked genes

Lus10040455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.