Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79010 339 / 1e-119 Alpha-helical ferredoxin (.1) AT1G16700 335 / 3e-118 ATMLO14 Alpha-helical ferredoxin (.1) ATCG01090 72 / 1e-15 ATCG01090.1, NDHI NADPH dehydrogenases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023571 [exp] 387 / 2e-138 AT1G79010 396 / 2e-142 Alpha-helical ferredoxin (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G154900 [exp] 342 / 5e-121 AT1G79010 335 / 3e-118 Alpha-helical ferredoxin (.1) Potri.009G116000 [exp] 342 / 6e-121 AT1G79010 368 / 3e-131 Alpha-helical ferredoxin (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0344 [flax] [poplar] 4Fe-4S PF00037 [flax] [poplar] Fer4 4Fe-4S binding domain
Representative CDS sequence Show only first row Show all	>Lus10040456 pacid=23173978 polypeptide=Lus10040456 locus=Lus10040456.g ID=Lus10040456.BGIv1.0 annot-version=v1.0 ATGGCATCCATGTTGGCTCGCAAGTCTCTCTCAGCACTCCGTGCTCGGCAGCTGGCTCTATCTGGTCCAGCTTTGAGGGCCTCACCTCTGTATGCCACCC GATCAAGTGCATTATTTTCAACAGACAGAGAGGATGTGGAGAGAGAGCAGCTTGGAAAGGAAATTTCGAAGGACTGGAATGCCGTTTTCGAGAGAAGCAT AAACACGCTCTTCCTTACTGAAATGGTCCGTGGTTTGATGTTGACACTGAAGTACTTCTTCGAACCAAAAGTTACTATCAACTATCCATTTGAGAAGGGT CCTTTGAGCCCTCGATTCCGTGGGGAGCATGCTCTCCGTCGATACCCTACTGGAGAGGAACGTTGCATTGCCTGCAAACTTTGTGAAGCTATATGCCCTG CCCAAGCGATCACAATCGAGGCTGAGGAACGAGAAGATGGAAGCCGTAGGACTACTAGGTACGACATTGACATGACGAAATGCATCTACTGCGGGTTTTG CCAAGAGGCATGCCCTGTAGACGCCATCGTTGAAGGACCCAACTTTGAATTTGCCACCGAAACCCACGAGGAGCTCTTGTACGACAAGGAGAAGCTACTC GAGAATGGCGACCGCTGGGAGACTGAGATTGCGGAGAACCTCCGGTCGGAGAGTCTGTATCGCTGA
AA sequence Show only first row Show all	>Lus10040456 pacid=23173978 polypeptide=Lus10040456 locus=Lus10040456.g ID=Lus10040456.BGIv1.0 annot-version=v1.0 MASMLARKSLSALRARQLALSGPALRASPLYATRSSALFSTDREDVEREQLGKEISKDWNAVFERSINTLFLTEMVRGLMLTLKYFFEPKVTINYPFEKG PLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLL ENGDRWETEIAENLRSESLYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10040456 [exp]	0	1
AT1G22520			Domain of unknown function (DU...		Lus10001541 [exp]	2.6	0.7413
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10021691 [exp]	3.2	0.8032
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10037143 [exp]	3.3	0.8241
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10023571 [exp]	11.3	0.7589
AT4G31250			Leucine-rich repeat protein ki...		Lus10026988 [exp]	13.0	0.6689
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10021742 [exp]	14.3	0.7535
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10031084 [exp]	15.9	0.7336
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	16.5	0.7628
AT5G50460			secE/sec61-gamma protein trans...		Lus10012539 [exp]	19.1	0.7219
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10042661 [exp]	20.9	0.6832

Compare expression of checked genes

Lus10040456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.