Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42250 440 / 5e-154 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22440 389 / 7e-134 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 389 / 7e-134 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT4G22110 386 / 7e-133 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 304 / 7e-101 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G24760 303 / 1e-100 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT5G43940 300 / 2e-99 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G64710 293 / 2e-96 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 282 / 4e-92 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G63620 91 / 8e-20 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023572 [exp] 595 / 0 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10005651 [exp] 408 / 6e-142 AT5G42250 430 / 7e-151 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004786 [exp] 397 / 5e-137 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004785 [exp] 393 / 2e-135 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000624 [exp] 384 / 5e-132 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10010506 [exp] 294 / 7e-97 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 292 / 4e-96 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 291 / 1e-95 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 289 / 5e-95 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013400 [exp] 476 / 3e-168 AT5G42250 521 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Potri.005G060000 [exp] 310 / 4e-103 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 308 / 2e-102 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 308 / 3e-102 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 307 / 5e-102 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 305 / 3e-101 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 304 / 9e-101 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.004G067000 [exp] 303 / 2e-100 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Potri.002G072100 [exp] 303 / 3e-100 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 299 / 8e-99 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10040457 pacid=23174072 polypeptide=Lus10040457 locus=Lus10040457.g ID=Lus10040457.BGIv1.0 annot-version=v1.0 ATGGACTCACCGGCGGAGAGATTGTCAACGGCAGGGAAGCCGATCCGATGCAAAGCTGCGGTTTGCCGGAAAGCAGGGGAGCCCTTGGCGATAGAGGAAG TAACGGTGGATCCGCCGCGGGTCCGGGAAGCTCGGATCCGGGTCATCTGTACGTCCGTTTGTAACACGGATGTTTGTTTCTGGAGGATGAAGGATTCCCC TGGTGGCAATTTCCCCATAATCCTTGGTCACGAAGGATTTGGGGTAGTGGAGAGCGTGGGAGAGGGCGTGGAAGAACTGAAGCAAGGGGACAGAGTGATC CCGATATTCCTTCCGGACTGCGGAGACCAATGCGCGGATTGTAGATCGAGCAAGAGTAACTTGTGCTCCAAGTTACCGTTCAAGATTTCGCCGTGGATGC CGAGAGATGACACGAGCAGATTCAGAGACCTTGAGGGGAATGTGATCCATCATTTCCTCTCTGTGTCGAGCTTCAGTGAGTATACTGTCGTCGATGTTGC CCATCTCACCAAGGTTGTTGATTCGTCTCTTGCGGTGGCCAACAGAGCTTGCCTCCTCACCTGCGGCATCTCTGCAGGTATTGGAGCAACTTGGAGAGCT GCAGAAGTGGATGAAGGATCCACGGTTGCAATCTTTGGCTTGGGCACAATTGGAATGGCTGTTGCTGAAGGAGCAAGACTCCGAGGAGCTGCCCGAATCA TCGGGGTCGATACGAACCCAGAAAGGTTCGAAATCGGGAAGAAGTTCGGGTTAACGGAGTTTGTCAACCCTGCCAGCTACGTAAACAAGCCGTTAAGTCA AGTGATAAAGGAGATGACCGACGGAGGAGGAGCGGATTACTGTTTCGAATGTGCCGGGTCTCCGATTTTAATGGAGCAAGCCTATGCTTCCGCTCGCAAG GGTTGGGGGAAGACGGTTGTGTTGGGAGTTGGCGGGGAAGGTTCAGAAGTGAAACTAAAGTGCATGGAAGTTCTTCAAACGGGGAAGACACTCACCGGGG CGCTATTCGGTGGGTTGAAGCCCAAATCCGACATTCAAGTGCTGCTCAAACGTTACATGGATAAGGAGTTAAAGCTAGACAAGTTTGTGATGGAGGAAAT GGAGCTCAACGACATCAACAAGGCCTTTGATCTACTTCTCCAAGGGAACTGTTTACGTTGTGTGATTTGGTTATACAAAGGAGAATAG
AA sequence Show only first row Show all	>Lus10040457 pacid=23174072 polypeptide=Lus10040457 locus=Lus10040457.g ID=Lus10040457.BGIv1.0 annot-version=v1.0 MDSPAERLSTAGKPIRCKAAVCRKAGEPLAIEEVTVDPPRVREARIRVICTSVCNTDVCFWRMKDSPGGNFPIILGHEGFGVVESVGEGVEELKQGDRVI PIFLPDCGDQCADCRSSKSNLCSKLPFKISPWMPRDDTSRFRDLEGNVIHHFLSVSSFSEYTVVDVAHLTKVVDSSLAVANRACLLTCGISAGIGATWRA AEVDEGSTVAIFGLGTIGMAVAEGARLRGAARIIGVDTNPERFEIGKKFGLTEFVNPASYVNKPLSQVIKEMTDGGGADYCFECAGSPILMEQAYASARK GWGKTVVLGVGGEGSEVKLKCMEVLQTGKTLTGALFGGLKPKSDIQVLLKRYMDKELKLDKFVMEEMELNDINKAFDLLLQGNCLRCVIWLYKGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10040457 [exp]	0	1
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10036746 [exp]	2.4	0.8801
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10014028 [exp]	3.5	0.8515
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10002626 [exp]	3.7	0.8819
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	3.9	0.8602
					Lus10001992 [exp]	8.1	0.7911
AT4G29310			Protein of unknown function (D...		Lus10012933 [exp]	10.2	0.8159
AT5G14510			ARM repeat superfamily protein...		Lus10022275 [exp]	12.0	0.8209
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031590 [exp]	13.0	0.7905
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10032159 [exp]	13.6	0.7925
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	15.7	0.8105

Compare expression of checked genes

Lus10040457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.