Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60050 69 / 4e-12 BTB/POZ domain-containing protein (.1) AT1G63850 68 / 6e-12 BTB/POZ domain-containing protein (.1) AT2G13690 60 / 3e-09 PRLI-interacting factor, putative (.1) AT3G50780 55 / 7e-08 unknown protein AT3G05675 52 / 5e-07 BTB/POZ domain-containing protein (.1.2) AT3G19920 43 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023573 [exp] 863 / 0 AT1G63850 87 / 8e-18 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 89 / 2e-18 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 88 / 4e-18 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 75 / 4e-14 AT3G50780 602 / 0.0 unknown protein Lus10016789 [exp] 74 / 4e-14 AT3G50780 408 / 1e-140 unknown protein Lus10038475 [exp] 71 / 1e-12 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 68 / 6e-12 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 69 / 7e-12 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10013580 [exp] 57 / 2e-08 AT3G05675 438 / 9e-152 BTB/POZ domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G154600 [exp] 549 / 0 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.001G100900 [exp] 84 / 5e-17 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G129700 [exp] 80 / 9e-16 AT3G50780 623 / 0.0 unknown protein Potri.001G233900 [exp] 75 / 3e-14 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 70 / 2e-12 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 68 / 7e-12 AT3G50780 654 / 0.0 unknown protein Potri.007G109300 [exp] 65 / 6e-11 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.005G058700 [exp] 65 / 7e-11 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.006G202900 [exp] 50 / 2e-06 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 49 / 9e-06 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040458 pacid=23174192 polypeptide=Lus10040458 locus=Lus10040458.g ID=Lus10040458.BGIv1.0 annot-version=v1.0 ATGTTCCCGATTAACCCTAAGAAACGGCAGCGCACGCCCAATCACCACCGCCAATTCGCCGCCGCTCGCGTCTCTTCCACCTCCGCTCTCATCGAATCCC TTTCGGACAGGACAATCAGCGAAACGTCTCAGAAGATCCGTCGAACGTCCTCTCATCCTCACCTCCTATCGCCTTCTTCTTGTTCTTCTTCATCCAACTC CGTCATCTCGTTTAATGATTCCTCCACCGCAGATGTGCTGCTCCTCCTCTACGTCGACCCCACAGCCCTCTCCATCGGCGACGACGCTTCTAGTTCCGGC TCTTCTTGTATTATGGACGAGAGGTCGGACGTCCAGATCTATCTCCATTCCGATGTCCTCCGACGCGCGAAGTATTTCTCGGCCCTATTATCCGATCGTT GGCAGCGGAACGATGACGCTGAGAAGGGATCGCATCAGGAAGGTGTCGATTCCGTTGCCGATGTTAGGCCGAAGCACCTGAAGCTGGGTGTTCCTCCAAG ACCTGGCTCGATCGATCTCAGGTTAGCTGTGCTGGAACTTCTATACACGAACGATTTCCCGTCGGTGATTACATCGGTCTCGGCCGCACTTGATCTATTA CCAGTGGCGTTGGAGTTATTGTTCGAGGATTGCGTCTCCAACTGCGTGAGCTTCCTTGAAGCGGTGCCGTGGAACGAAGAGGAAGAAATGCGAGTACTGC AGCTGGTTCCGTTCCTAAGCGAGGACGAATCGAAAAATCTTCTAGCCAGACTTTCCCCGGCGAAAGAGGACTCCTGCGAGGAAATGCTTCAAGGTTTGAT CTCCGCCGCGGCAACTAACAACCAGCCAAACATGGCGTACGTGAAGGCGTTCGTAGCGAAGCTGTTACGGGATTTCTCGTCGAGGAACGCTGCTAGGACA GTATTGGAGAAGGCATTCCAGACGAGCTTGAAGGTTGTGAAGGAGTCGTTGGAGAAGTACTCGAGCCCTGATGTCAGAGGAGACCACAACGAGATAGAGG CCATACAGCGGTTGAATCTGCACACGGCCATGACCATTGGGAAGCAGCTGCTGTGGCTGGTGGAGAGGATGATCGAGTTGAGAGTGGCGGATAATGCTGT TAAGGAATGGAGTGAGCAGTCTGCCTTTACAGCTGATTTGCAGAGGGCTTTTAGGGATGATGTTTGGAGGAATATTGTTCCTGGGCTTCCTGCTATTATG ATCCGCTGCACTTACAAGCTTGCCTATGCTGTTGCTACGGGAACCATTCTTGCTGCTAGACAGGTGAGGATGAAGCTGGTAAGCGACTGGCTTCCAGTTC TGATAATATGCAAAGACAAGGTCTCCCCAATGTCGCCTGGGCACAAAGCACTGTATCTGGAGCTCGAGGAGACATTCGTAAGAATCATCTCAACCCTTCC AATGTCAGATTCACAGGAACTGCTTCAGCAGTGCCTTAGCTTGTCGACCCGTAACGTTGATGATTGCCCCCACTTGATCTCCGCTTTCAACACTTGGTTC CGCCGCGCAACTCGCCCTCCACCTGAAGATCAGCCTCGTCACCAGATCGGTGAACATTAG
AA sequence Show only first row Show all	>Lus10040458 pacid=23174192 polypeptide=Lus10040458 locus=Lus10040458.g ID=Lus10040458.BGIv1.0 annot-version=v1.0 MFPINPKKRQRTPNHHRQFAAARVSSTSALIESLSDRTISETSQKIRRTSSHPHLLSPSSCSSSSNSVISFNDSSTADVLLLLYVDPTALSIGDDASSSG SSCIMDERSDVQIYLHSDVLRRAKYFSALLSDRWQRNDDAEKGSHQEGVDSVADVRPKHLKLGVPPRPGSIDLRLAVLELLYTNDFPSVITSVSAALDLL PVALELLFEDCVSNCVSFLEAVPWNEEEEMRVLQLVPFLSEDESKNLLARLSPAKEDSCEEMLQGLISAAATNNQPNMAYVKAFVAKLLRDFSSRNAART VLEKAFQTSLKVVKESLEKYSSPDVRGDHNEIEAIQRLNLHTAMTIGKQLLWLVERMIELRVADNAVKEWSEQSAFTADLQRAFRDDVWRNIVPGLPAIM IRCTYKLAYAVATGTILAARQVRMKLVSDWLPVLIICKDKVSPMSPGHKALYLELEETFVRIISTLPMSDSQELLQQCLSLSTRNVDDCPHLISAFNTWF RRATRPPPEDQPRHQIGEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	0	1
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	1.4	0.8924
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	1.4	0.8944
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	2.4	0.8860
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	3.9	0.8720
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	4.4	0.8295
AT5G46170			F-box family protein (.1)		Lus10023298 [exp]	5.2	0.8543
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	5.3	0.8763
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Lus10003694 [exp]	7.5	0.8085
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10019687 [exp]	8.0	0.8370
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	8.8	0.8664

Compare expression of checked genes

Lus10040458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.