Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34500 533 / 0 Protein kinase superfamily protein (.1) AT1G01540 469 / 6e-164 Protein kinase superfamily protein (.1.2) AT4G01330 459 / 7e-160 Protein kinase superfamily protein (.1.2) AT4G02630 444 / 7e-154 Protein kinase superfamily protein (.1) AT3G59110 428 / 2e-147 Protein kinase superfamily protein (.1) AT1G56720 426 / 5e-147 Protein kinase superfamily protein (.1.2.3) AT1G09440 421 / 3e-145 Protein kinase superfamily protein (.1) AT2G42960 413 / 1e-141 Protein kinase superfamily protein (.1) AT5G18500 409 / 3e-140 Protein kinase superfamily protein (.1.2) AT3G17420 397 / 7e-136 GPK1 glyoxysomal protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023574 [exp] 709 / 0 AT4G34500 547 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 570 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10041593 [exp] 454 / 1e-157 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018722 [exp] 454 / 1e-157 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10036386 [exp] 453 / 1e-157 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 453 / 1e-157 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 447 / 3e-157 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 453 / 4e-157 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10026338 [exp] 446 / 5e-151 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G154000 [exp] 551 / 0 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 547 / 0 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 462 / 2e-161 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 459 / 1e-159 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 431 / 1e-148 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 431 / 1e-148 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 428 / 2e-147 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 426 / 8e-147 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G214200 [exp] 412 / 2e-141 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G139500 [exp] 409 / 1e-140 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040459 pacid=23173817 polypeptide=Lus10040459 locus=Lus10040459.g ID=Lus10040459.BGIv1.0 annot-version=v1.0 ATGCCGGCCGCCGGAGCAAACGCCGGCAGTAAGCTGAATTCTTCCTCGCCAATGATTCTAAACCTCAAGCTCTACGTCCTCATCGGCATCTTCTCCGCCT CCCTCATCTTGCTCTGCCTCGCACTCTTCCTCTGCTTCCGGCTGAACCACCTGTCCCGGCGGCGCGTGAAGCACAGCTCCGGATCCATCCCTTTAGTACT CTCCGAGATCAGCACAAACAGTACCACGAACAAGTCATCCATCGATGTCGAAGCTGCAAACGGCGACGTGGGTAAGCTCGCCTGTACCGAATCCCCCGTG AAGAATCAGGATGAGGTTAAAGTTCCCACCGGCGGAAATGAGCTGACGGCGGTGGAGGGATGGGGGAGGTGGTACGGGTTAAAGGAGCTGGAGACAGCGA CAAAGGGGTTTGCGGCGGAGAACGTTGTCGGAGAAGGCGGATATGGCATCGTTTACAGGGGAGTGTTGGCCGACGGCTCTGTTGTCGCCGTCAAGAATCT CCTCAACAACAAAGGACAGGCAGAGAAGGAGTTCGAGGTTGAAGTAGAAGCCATTGGCAAAGTACGGCACAAGAACTTGGTTGGCCTGATTGGCTACTGT GTTAGTGGCCCTAGCAGGACGCTGGTCTACGAATACGTCGACAATGGCAACTTGGAGCAGTGGCTACACGGAGTTGATGGACCCATTAGCCCCTTAACAT GGGACATCCGGATGAAGATCGCCATTGGCACTGCCAAAGCGCTAGCTTATCTACACGAAGGGCTAGAGCCAAAGGTGGTGCACCGTGACGTAAAGTCGAG CAACATCCTCCTTGACCGGAAGTGGAATGCGAAAGTCTCCGATTTTGGACTGGCCAAGCTTTTGCGAGGCGAATCGAGCTACGTGACTACTCGAGTCATG GGAACATTCGGATACGTGTCCCCCGATTACGCAAGCACGGGAATGCTCAACGAGGGGAGCGATGTGTACAGTTTCGGAGTTCTCCTTATCGAGATCATCA CGGGGAGGAGCCCTATCGATTACTCCAAACCAGCTAGCGAGATGAACTTGGTGGATTGGTTCAAGGGAATGGTGGCTAGGCGTCGCGGAGAAGAGCTAGT CGACCCGTCAATCGAAGTTCAGCCATCCCCAAGAGCTCTGAAAAGAGCCTTGCTGGTTTGTCTTAGGTGTATAGATTTGGATTCCTGCAAAAGGCCAAAG ATGGGGCAGATTGTTCATATGCTTGAAAGCTAG
AA sequence Show only first row Show all	>Lus10040459 pacid=23173817 polypeptide=Lus10040459 locus=Lus10040459.g ID=Lus10040459.BGIv1.0 annot-version=v1.0 MPAAGANAGSKLNSSSPMILNLKLYVLIGIFSASLILLCLALFLCFRLNHLSRRRVKHSSGSIPLVLSEISTNSTTNKSSIDVEAANGDVGKLACTESPV KNQDEVKVPTGGNELTAVEGWGRWYGLKELETATKGFAAENVVGEGGYGIVYRGVLADGSVVAVKNLLNNKGQAEKEFEVEVEAIGKVRHKNLVGLIGYC VSGPSRTLVYEYVDNGNLEQWLHGVDGPISPLTWDIRMKIAIGTAKALAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLRGESSYVTTRVM GTFGYVSPDYASTGMLNEGSDVYSFGVLLIEIITGRSPIDYSKPASEMNLVDWFKGMVARRRGEELVDPSIEVQPSPRALKRALLVCLRCIDLDSCKRPK MGQIVHMLES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	0	1
AT4G34500			Protein kinase superfamily pro...		Lus10023574 [exp]	1.4	0.8883
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	4.0	0.8727
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	5.2	0.9138
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	6.3	0.8239
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10014670 [exp]	11.8	0.8191
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038066 [exp]	12.4	0.8815
AT4G03230			S-locus lectin protein kinase ...		Lus10031603 [exp]	15.7	0.8712
AT2G30933			Carbohydrate-binding X8 domain...		Lus10020765 [exp]	18.5	0.8100
					Lus10026444 [exp]	19.6	0.7776
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038206 [exp]	24.5	0.8489

Compare expression of checked genes

Lus10040459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.