Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34490 593 / 0 ATCAP1 cyclase associated protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023575 [exp] 799 / 0 AT4G34490 647 / 0.0 cyclase associated protein 1 (.1) Lus10026338 [exp] 674 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10042324 [exp] 673 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115500 [exp] 652 / 0 AT4G34490 665 / 0.0 cyclase associated protein 1 (.1) Potri.004G153900 [exp] 642 / 0 AT4G34490 659 / 0.0 cyclase associated protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0391 [flax] [poplar] CAP_C-like PF08603 [flax] [poplar] CAP_C Adenylate cyclase associated (CAP) C terminal CL0391 [flax] [poplar] PF01213 [flax] [poplar] CAP_N Adenylate cyclase associated (CAP) N terminal
Representative CDS sequence Show only first row Show all	>Lus10040460 pacid=23174204 polypeptide=Lus10040460 locus=Lus10040460.g ID=Lus10040460.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGCTGATCGCTCGGCTGGAATCGGCCGTGTCGCGGTTGGAATCGCTGTCTTCTTCTCCCGTCTTCACATCCCGGGATATCGGCGGTGGAG ATTTCGTTTCCTCGTCTTCCGATCCGTCGATTCTGGCTTTTGACGATCTGATCCGCGAGTCATTCGGTAGGGTTTCGGCCGCTGCGGAGAAGATCGGGGG ACAGGTCCTGGAGGTTACCAAGGTTATCGGTCAGGCTCTTGATATCGAGAAGGAGCTTCTCGTCAGCATTAAGCAAACCAAGAAACCTGACATGGCGGGA ATGGGTGAATTCATGAGGCCTCTAAACGAGGTGATTGGGGAAGTGAATGCGATGACGGAAGGGAGGAGATCCGATTTCTTCAACCACTTTAAGACTGCTG CCGATAGTCTTTCGGCTTTAGTGTGGATTGCTTATACCGGCAAAGACTGTGGTATGAGTATGCCCATTGCGTACGTAGAAGAGAGCTGGCAGATGGCTGA ATTCTACAATAACAAGATTCTTGTGGAATACAAGAGCAAAGACCCGAATCATGTTGAATGGGCGAAAGCTGTGAAGGAACTCTACTTGCCGGGTCTGAAG GATTATGTTAAGAGCTACTATCCGTTGGGTCCGGTATGGTGTGCTACTGGAAGATCTGTGGCCTCTAGGCCAAGTGCTCCTGCTCCCCCGCCAGCTTCTC ACTTCAGCGCTGAATGTTCGAACCCTTCATCGTCAAAGCCAAATGCGAGCATGGCTGCTGTGTTCCAAGAGATCAATTCTGGGAAGCCTGTAACTGCAGG TCTGAAGAAGGTCACAAACGATATGAAATCCAAGAATCGCGCTGATAGGACTGGTGTCGTTGCTACCACTGATAAAGGAGCTGCTTCTTCATCTTCGTCT TCTTCGAAGAAGACAAAGACGGGACCTCCTAAGTTTGAGCTTCAAATGGGTCGGAAGTGGGTTGTTGAGAATCAGATTGGAAACAAGAATATAGTCATTA GCGACTGTGATGCTAAGCAATCAGTGTATATGTTCGGATGCAAAGATTCTGTTCTGCAAATTCAAGGCAAAGTGAACAACATCACCGTTGACAAGTGTAC TAAGACCGGGGTGGTATTTTCGGATGTTGTAGCTGCTTGCGAGGTTGTAAATTGCAGCAGTGTTGAAGTGCAATGCCAGGGTTCAGCTCCAACCATTTCA GTGGACAATACTGCTGGCTGTCAGCTGTATCTGAGCAAGAACTCCCTCGAGACGTCCATAACCACCGCAAAGTCTAGCGAGATCAACGTGTTGGTGCCTG GTGCTGAGCCTGATGGTGACCTGGTAGAGCATGCTTTGCCACAGCAGTATGTTCATCTGTTCGAGGACGGCAAGTTCGAAACGACTCCGGTTTCCCACTC TGGAGGGTAA
AA sequence Show only first row Show all	>Lus10040460 pacid=23174204 polypeptide=Lus10040460 locus=Lus10040460.g ID=Lus10040460.BGIv1.0 annot-version=v1.0 MEEKLIARLESAVSRLESLSSSPVFTSRDIGGGDFVSSSSDPSILAFDDLIRESFGRVSAAAEKIGGQVLEVTKVIGQALDIEKELLVSIKQTKKPDMAG MGEFMRPLNEVIGEVNAMTEGRRSDFFNHFKTAADSLSALVWIAYTGKDCGMSMPIAYVEESWQMAEFYNNKILVEYKSKDPNHVEWAKAVKELYLPGLK DYVKSYYPLGPVWCATGRSVASRPSAPAPPPASHFSAECSNPSSSKPNASMAAVFQEINSGKPVTAGLKKVTNDMKSKNRADRTGVVATTDKGAASSSSS SSKKTKTGPPKFELQMGRKWVVENQIGNKNIVISDCDAKQSVYMFGCKDSVLQIQGKVNNITVDKCTKTGVVFSDVVAACEVVNCSSVEVQCQGSAPTIS VDNTAGCQLYLSKNSLETSITTAKSSEINVLVPGAEPDGDLVEHALPQQYVHLFEDGKFETTPVSHSGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	0	1
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	1.7	0.9341
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	2.4	0.9274
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	5.0	0.8717
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10043160 [exp]	6.0	0.8691
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	7.7	0.9028
AT5G21070			unknown protein		Lus10025552 [exp]	8.9	0.8267
AT5G04310			Pectin lyase-like superfamily ...		Lus10023542 [exp]	9.7	0.8025
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	10.4	0.8821
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10032809 [exp]	11.3	0.8384
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	15.5	0.8563

Compare expression of checked genes

Lus10040460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.