Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16230 634 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 616 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 490 / 5e-172 Glycosyl hydrolase family 17 protein (.1) AT5G24318 398 / 2e-135 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G55180 352 / 2e-117 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 346 / 7e-115 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 344 / 2e-114 O-Glycosyl hydrolases family 17 protein (.1) AT3G55430 321 / 1e-105 O-Glycosyl hydrolases family 17 protein (.1) AT1G32860 316 / 7e-104 Glycosyl hydrolase superfamily protein (.1) AT5G56590 314 / 4e-102 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023576 [exp] 829 / 0 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 615 / 0 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032719 [exp] 458 / 1e-160 AT2G16230 430 / 4e-149 O-Glycosyl hydrolases family 17 protein (.1) Lus10016539 [exp] 386 / 3e-130 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 386 / 3e-130 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 376 / 8e-127 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 372 / 1e-125 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 353 / 3e-118 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10040600 [exp] 353 / 1e-117 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115400 [exp] 717 / 0 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 710 / 0 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 672 / 0 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183800 [exp] 556 / 0 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182800 [exp] 554 / 0 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G185100 [exp] 551 / 0 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182500 [exp] 548 / 0 AT2G16230 504 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184300 [exp] 542 / 0 AT2G16230 511 / 1e-179 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184900 [exp] 537 / 0 AT2G16230 498 / 2e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182000 [exp] 536 / 0 AT2G16230 506 / 2e-177 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10040461 pacid=23174099 polypeptide=Lus10040461 locus=Lus10040461.g ID=Lus10040461.BGIv1.0 annot-version=v1.0 ATGCTAATTCCTTCTCTCGCCGCCGCCTTCCTCCTCCTCCTCCTCCTCCACCATTTCCCTTTCGCCAATTCCCAATCGTTCATCGGAGTCAACTACGGTC AAGTAGCCGACAACCTCCCGCCGCCGCCTGCCACCGCCAAGCTCCTCCAGTCCACCACCGTCCAGAAGGTCCGACTCTACGGCGCCGACCCGGCGATAAT CAAGTCCCTCGCCAACACCGGGATTGGAATCGTGATCGGAGCCGCCAACGGCGACATCCCGTCTCTCGCCGGCGATCCCAACTTTGCGGGCCAGTGGGTC AACTCGAACGTCCTCGCCTTCTACCCGGCCAGCAACATCGTCCTCGTCACCATCGGCAACGAGGTCCTCCTCTCCGGCGACCAGGGCCTCGTCTCCCAGC TCCTCCCGGCGATGCAGAACGTCCAGAACGCTCTCAACGCGGCGTCGGTTGGTGGGAAAGTTAAGGTCTCGACGGTCCACTCGATGGCGGTGCTGGGTCG GTCCGACCCGCCGTCTTCGGGCTCGTTCGACCCGGAGTATGGGGACACGATGAAGGCTCTGCTGCAGTTCCAGAGAGCGGTCGGGTCACCGATTGCTATT AACCCGTACCCGTTCTTCGCGTACCAGAGTGACCCGAGGCCCGAAACGCTGGCGTTTTGCCTGTTTCAGCCCAACGCGGGGCGAGTCGACTCGGGGAGTG GGATCAAGTACATGAACATGTTCGATGCCCAGGTTGATGCGGTGAGATCGGCTCTGAATGCAATGGGGTTCAAGGACATCGAGATTCTAGTCGCGGAGAC GGGCTGGCCCTACCGTGGGGACCCGAACGAAGTTGGACCGAGTATCGAAAATGCTAGAGCCTACAATGGCAACTTGATTGCTCACCTTAGGTCCATGGCT GGAACTCCGTTGATGCCGGGGAAGTCAGTCGACACTTTCTTCTTCGCTCTGTTTGACGAAGACCTTAAACCAGGACCTTCCTCCGAACGTAGCTTCGGAC TGTTCAAGCCTGATCTTTCCATGACTTATGACGTTGGTCTGTCCAAGACCACCAGCCCACAGAGTCCACCGCCGTCATCATCATCAGGATCGTCGAAAAC GCCATCTACGCCACAGGCCACGCAGTGGTGCGTGTCGAAGCCAGGTGTGTCCCAGGCCCAGTTGCAGGCGAGCCTGGATTACGCGTGTGGCCAAGGAGTA GACTGCACTCCTTTGCTCCCCGGAGGTGCTTGTTTCGAGCCGAACACTGTCGAGTCTCATGCTGCTTATGCAATGAACCTCTACTTCCAGAGGTCGGAAA AGCGTCCTTGGAACTGTGACTTCTCGCAGACTGCTGCCTTGACTTCCAAGAACCCTAGCTATAATGGATGCAATTACCCTGGAGGAAGTACATGA
AA sequence Show only first row Show all	>Lus10040461 pacid=23174099 polypeptide=Lus10040461 locus=Lus10040461.g ID=Lus10040461.BGIv1.0 annot-version=v1.0 MLIPSLAAAFLLLLLLHHFPFANSQSFIGVNYGQVADNLPPPPATAKLLQSTTVQKVRLYGADPAIIKSLANTGIGIVIGAANGDIPSLAGDPNFAGQWV NSNVLAFYPASNIVLVTIGNEVLLSGDQGLVSQLLPAMQNVQNALNAASVGGKVKVSTVHSMAVLGRSDPPSSGSFDPEYGDTMKALLQFQRAVGSPIAI NPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGSGIKYMNMFDAQVDAVRSALNAMGFKDIEILVAETGWPYRGDPNEVGPSIENARAYNGNLIAHLRSMA GTPLMPGKSVDTFFFALFDEDLKPGPSSERSFGLFKPDLSMTYDVGLSKTTSPQSPPPSSSSGSSKTPSTPQATQWCVSKPGVSQAQLQASLDYACGQGV DCTPLLPGGACFEPNTVESHAAYAMNLYFQRSEKRPWNCDFSQTAALTSKNPSYNGCNYPGGST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10040461 [exp]	0	1
AT1G62790			Bifunctional inhibitor/lipid-t...		Lus10024591 [exp]	1.0	0.9094
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	2.2	0.8784
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10000985 [exp]	4.5	0.8806
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	12.8	0.8846
AT1G26140			unknown protein		Lus10017899 [exp]	14.5	0.8429
AT4G11950			Protein of unknown function (D...		Lus10006712 [exp]	15.1	0.8393
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	16.2	0.8881
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	16.4	0.8758
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	20.0	0.8563
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10040417 [exp]	25.6	0.8716

Compare expression of checked genes

Lus10040461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.