Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 117 / 5e-29 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 92 / 3e-20 F-box associated ubiquitination effector family protein (.1) AT3G06240 83 / 4e-17 F-box family protein (.1) AT3G23880 76 / 5e-15 F-box and associated interaction domains-containing protein (.1) AT3G07870 76 / 1e-14 F-box and associated interaction domains-containing protein (.1) AT3G16210 73 / 7e-14 F-box family protein (.1) AT5G10340 67 / 5e-12 F-box family protein (.1) AT2G02030 66 / 9e-12 F-box family protein (.1) AT4G17780 65 / 2e-11 MYB MYB39, AtMYB39 F-box and associated interaction domains-containing protein (.1) AT1G53550 58 / 4e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010910 [exp] 333 / 4e-112 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10031512 [exp] 328 / 1e-109 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10043335 [exp] 280 / 7e-93 AT4G12560 84 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 278 / 1e-89 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 278 / 1e-89 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10000190 [exp] 278 / 1e-89 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10040338 [exp] 191 / 1e-56 AT4G12560 78 / 1e-15 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10027028 [exp] 151 / 6e-44 AT4G12560 54 / 7e-09 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10025893 [exp] 115 / 6e-30 AT1G11270 49 / 7e-07 F-box and associated interaction domains-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G013000 [exp] 135 / 2e-35 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G010800 [exp] 129 / 2e-33 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 97 / 5e-22 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 93 / 8e-21 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.011G037312 [exp] 94 / 9e-21 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.010G154700 [exp] 94 / 1e-20 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 94 / 1e-20 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G037200 [exp] 92 / 2e-20 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 88 / 8e-19 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.011G121200 [exp] 86 / 3e-18 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10040463 pacid=23173954 polypeptide=Lus10040463 locus=Lus10040463.g ID=Lus10040463.BGIv1.0 annot-version=v1.0 ATGTCAGATCACATCCCACAAGCAGTCCTGGCCAACATTCTGATACGACTCAGGGTGAAGGATCTAGTGAGTTGCAGGCGAGTCTCGAAGCAGTGGCTCT CCATCATCGACAACCCTAACTTCGTCAGTCGCCAACTCGACTGTGCTGTTTCCACAAACACCAAAGCTGCAATTTTCCTCCAAGGCAGATCATGGCATGA TCTCTTCTGGAAAAAAAAGTTTGTCGGCGGTACTAGATCCTTCTCCAACCCGATCCTTCGTTTGTTCAGCCCAGTGTTCTTGATCGGCTCTTGTCACGGT CTGGTATGCTTTTCTGGTTTCGTATTTCCGCATGATTTCGTAATAGTTAACCCATCATCTGGGGAGCAACACAGACTAAGCAATCCCTCAAAGGAAGGAA AAGGAATAGTAGGACATAAACCGGAAGCATATGGTTTCGGGTACGACGAGTTATCAGACGATTATAAGGTGGTAATGATTTTGGAAACAAGCTGGTCTGA TCCCCGCAATCGTTCCTACATCGCTGAAATTTACGGAATCAGGTCTAAGGTCTTTACGACGATTCCTTTGCCCAATGCAGAGTGGAGGAACTCCGATTGT AAGTCAATTGGAGTGTTTTTTGGAGGCTCGTTACATTGGTGTACCATGGATTCTTGTAATTTTGCTCGTCCAATTCGACATGTGATTCATGCCATTGATC TTGCGTCAAACACCTATCGTCAGTTGCAGTTTCCAGAAACCATTTGCGGTCAGGTTTTGTTTGTGAATGTGGGAATTGTAGACATACGCTTGTGTCTATG TGGTTATGAGAGGGATTCGGGGAAAATTGGCATCTGGGTTATGGACGAGTACGGGAATCTTGAATCGCTGAATAAAATCTACAGCATTGAGTATTTTTCT GATCCTTCGGCTGTAACCTCTGTGGGGAGTGATGGAGATAAGATTTTGATGAGGATTGATTGGGGTAATTTTGCTTGGTATGATCCGACGAAGGATGAGT ATGAGACTATCAGTATGGAGGATATGAAGAGTAGAACATATGAAGCTATCTATTGTTTGGAGAGTCTTGTTAAGATACTTCCAAGTGATGTGAAGAAGGA TGCTTCCGATACGAAATTAGCTGACCAGAAAATTTCGCAGAAGAAGAGTCGTTCGCCTGCTTTCCTCGAACCGATGATGCAGCGTGATGACAGTTCTGAT GAGGAGTACTGTACATGGTAG
AA sequence Show only first row Show all	>Lus10040463 pacid=23173954 polypeptide=Lus10040463 locus=Lus10040463.g ID=Lus10040463.BGIv1.0 annot-version=v1.0 MSDHIPQAVLANILIRLRVKDLVSCRRVSKQWLSIIDNPNFVSRQLDCAVSTNTKAAIFLQGRSWHDLFWKKKFVGGTRSFSNPILRLFSPVFLIGSCHG LVCFSGFVFPHDFVIVNPSSGEQHRLSNPSKEGKGIVGHKPEAYGFGYDELSDDYKVVMILETSWSDPRNRSYIAEIYGIRSKVFTTIPLPNAEWRNSDC KSIGVFFGGSLHWCTMDSCNFARPIRHVIHAIDLASNTYRQLQFPETICGQVLFVNVGIVDIRLCLCGYERDSGKIGIWVMDEYGNLESLNKIYSIEYFS DPSAVTSVGSDGDKILMRIDWGNFAWYDPTKDEYETISMEDMKSRTYEAIYCLESLVKILPSDVKKDASDTKLADQKISQKKSRSPAFLEPMMQRDDSSD EEYCTW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040463 [exp]	0	1
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10017851 [exp]	14.1	0.7855
AT2G12462			unknown protein		Lus10001679 [exp]	14.5	0.7314
AT4G28600		NPGR2	no pollen germination related ...		Lus10024926 [exp]	24.5	0.6569
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Lus10013389 [exp]	33.2	0.7509
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10017407 [exp]	36.4	0.7288
AT1G77580			Plant protein of unknown funct...		Lus10000186 [exp]	37.2	0.7332
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	45.5	0.7186
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10010206 [exp]	51.6	0.6985
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	55.3	0.7219
AT5G28150			Plant protein of unknown funct...		Lus10020240 [exp]	69.0	0.6788

Compare expression of checked genes

Lus10040463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.