Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34460 569 / 0 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT4G02730 90 / 1e-19 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 90 / 3e-19 WD-40 repeat family protein / notchless protein, putative (.1) AT5G67320 86 / 1e-17 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G25150 82 / 1e-16 TAF5 TBP-associated factor 5 (.1) AT1G18080 76 / 5e-15 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 76 / 6e-15 RACK1C_AT receptor for activated C kinase 1C (.1) AT5G13480 76 / 2e-14 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G71840 75 / 2e-14 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 73 / 6e-14 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023579 [exp] 717 / 0 AT4G34460 590 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10042325 [exp] 661 / 0 AT4G34460 598 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10026337 [exp] 647 / 0 AT4G34460 570 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10029493 [exp] 88 / 2e-18 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10014674 [exp] 84 / 7e-18 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 86 / 9e-18 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006916 [exp] 81 / 8e-17 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 81 / 3e-16 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10017570 [exp] 80 / 3e-16 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115300 [exp] 650 / 0 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.004G153700 [exp] 644 / 0 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.006G045800 [exp] 88 / 2e-18 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G051900 [exp] 85 / 4e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 83 / 1e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 81 / 3e-16 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.015G041600 [exp] 80 / 3e-16 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 79 / 6e-16 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 77 / 6e-15 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 77 / 8e-15 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10040464 pacid=23174196 polypeptide=Lus10040464 locus=Lus10040464.g ID=Lus10040464.BGIv1.0 annot-version=v1.0 ATGTCCGTCGCCGAGCTGAAGGAGCGCCACGTGGCGGCTACAGAGACCGTCAACACTCTCAGGGAACGCTTGAAGCAGAAACGCCTCCAATTGCTTGATA CAGATGTTTCTGGGTACTGCAAATCGCAGGGGAAGTCTCCGGTCACCTTCGGCCCTACCGATCTCGTTTGCTGCCGGACGCTTCAGGGGCATACTGGCAA GGTTTACTCATTGGATTGGACATCAGAAAAGAACAGGATAGTGAGTGCTTCGCAAGACGGGAGGTTAATCGTATGGAACGCGCTAACGAGCCAGAAAACC CACGCAATCAAGCTGCCTTGTGCATGGGTGATGACGTGTGCCTTCTCGCCATCTGGACAATCGGTTGCTTGCGGTGGTCTTGACAGCGTCTGTTCCATCT TCAACTTGAACTCGCCGGCTGATAAGGACGGGAACTTAACCGTGTCAAGAATGCTTACCGGACACAAGGGCTATGTGTCTTGCTGCCAGTACGTTCCAGA CGAAGATACACAACTGATAACTGGCTCCGGCGATCATACGTGTGCGTTATGGGACACCACCACGGGCCTCAGGACTTCTCTTTTTGGCGGAGAGTTTCAG TCCGGCCACACTGCTGATGTACAATGTGTATCAATCAACGGAACGAACTCGAGGATGTTCGTATCGGGTTCTTGCGACAAAACTGCTCGCCTATGGGACA CTCGAGTTGCCAGTCGAGCTTCGCGTACATTTTACGGTCACGAGGCAGACGTTAACACAGTGAAGTTCTTCCCGGACGGCAACAGGTTTGCCACAGGTTC GGACGATGGAACGTGTAGGCTTTTCGACATCAGGACTGGACATCAGTTGCAAGTGTACTACCAACAGCACGGCGAAGAGAATGAAATACCGCATGTGACA TCCATCGCCTTCTCGATATCGGGAAGGCTTCTCTTTGCTAGCTACTCCAACGGTGACTGCTACGTTTGGGATACTCTACTAGCAAAGGTTGTTCTGAACT TGGGCTCTCTGCAAAACTCGCACGATGCTCGAATCAGCTGTTTGGGTTTGTCATCTGATGGAAGCGCATTATGCACTGGAAGTTACGATACCAACCTAAA GGTAAGCCCTTCTCCGAGCACAAACATGAATACCACTGAATCGAAATGGTTGGTCTCGAGTATGCTAGCTGACTGTGTTCTGTTTCATGGTCTGTTCTCC AGGTTTGGGCATTCGGTGGACACAGAAGAGTCGTCTGAGTTGTCGAAAGAGCATACATTACCACATTCGAGCACATTCTTCTCGGCTTTGTGA
AA sequence Show only first row Show all	>Lus10040464 pacid=23174196 polypeptide=Lus10040464 locus=Lus10040464.g ID=Lus10040464.BGIv1.0 annot-version=v1.0 MSVAELKERHVAATETVNTLRERLKQKRLQLLDTDVSGYCKSQGKSPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKT HAIKLPCAWVMTCAFSPSGQSVACGGLDSVCSIFNLNSPADKDGNLTVSRMLTGHKGYVSCCQYVPDEDTQLITGSGDHTCALWDTTTGLRTSLFGGEFQ SGHTADVQCVSINGTNSRMFVSGSCDKTARLWDTRVASRASRTFYGHEADVNTVKFFPDGNRFATGSDDGTCRLFDIRTGHQLQVYYQQHGEENEIPHVT SIAFSISGRLLFASYSNGDCYVWDTLLAKVVLNLGSLQNSHDARISCLGLSSDGSALCTGSYDTNLKVSPSPSTNMNTTESKWLVSSMLADCVLFHGLFS RFGHSVDTEESSELSKEHTLPHSSTFFSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	0	1
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	1.4	0.8281
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	7.9	0.7929
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	8.8	0.8284
AT4G40042			Microsomal signal peptidase 12...		Lus10006422 [exp]	9.2	0.8031
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	10.5	0.8093
AT3G60380			unknown protein		Lus10028193 [exp]	10.8	0.7501
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	12.3	0.8171
AT5G18260			RING/U-box superfamily protein...		Lus10020256 [exp]	15.7	0.8026
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	19.6	0.8211
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10032839 [exp]	25.7	0.7688

Compare expression of checked genes

Lus10040464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.