Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34440 503 / 6e-172 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT2G18470 491 / 6e-168 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT3G24550 474 / 6e-161 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G18810 461 / 3e-155 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G49270 446 / 2e-149 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT1G52290 436 / 7e-148 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 418 / 5e-141 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G70460 408 / 1e-134 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 407 / 3e-134 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT4G32710 392 / 2e-132 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042327 [exp] 583 / 0 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10026335 [exp] 544 / 0 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10024020 [exp] 491 / 9e-169 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10011098 [exp] 492 / 5e-168 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10041734 [exp] 478 / 2e-163 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10023645 [exp] 479 / 3e-162 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 473 / 9e-161 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10014318 [exp] 462 / 1e-160 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10023581 [exp] 423 / 6e-147 AT1G52290 269 / 4e-86 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027000 [exp] 494 / 3e-169 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.005G124400 [exp] 491 / 3e-168 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.009G115200 [exp] 488 / 2e-166 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 488 / 2e-166 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 486 / 2e-165 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 444 / 2e-150 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 438 / 6e-148 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 415 / 6e-137 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 410 / 6e-135 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.017G110400 [exp] 405 / 4e-133 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10040467 pacid=23173967 polypeptide=Lus10040467 locus=Lus10040467.g ID=Lus10040467.BGIv1.0 annot-version=v1.0 ATGTTGAATGTTACTGCTCCTGCTCCCACGACAAAATCACCATCACCACCACCACCGACAAATTCTCCACCGCCCTCGAAACGCTCGCCTCCACCTCCGC CAGCAGTGAAGCCGAAGCCTCCACCGGCCCCAAAATTACAACCCCCACCACTGCCGCCGGCGCGGCCTCTAACTCCTATACAACCCTTACCACCACCCAT TCCAGTACTACCGCCGCCGGCACTCCCAGCATCACAACGACCGCATCCGCGCCCGTTAGGACCACCCCCGCCACACACCAAGCCGAGCGGCGGTGGCGGA GGAGGAGGTGGACAAAGCAACAATAGTAATAACGTTGTATCCATCGGAGTTGGGGTCGCCGTCGGTGTGACTGCGGTCCTTTTTGTGGGCGCGGTTGCAT ATTTTTGCTTCTGCAGAAAAAGAAAGAGGAACGATGATCATGAACTCGCTTACTATGCCTCGGCTCCCCCTCCTCATAAAGGTCAACCTGGTGGCTACTA CGTCGCATCTCCAGCCCATGCAATGGCGGGGAGATACTACGCTTCCAATCAACCCCCTCACCACCAAAGCTGGCAAGTCAACACCGCTTCAACGCCGGCC CCCGGTGGCCTCTGGCAGCAACCACCGACGCTGCCGACATCTCAGCCTGCGACTCCTTCGAAGGGAAACAACAACAGCAGCACATTCTCGTACGAGGAGC TTCAGGCTGCGACCAACGGGTTCGCAGCCTCGAATCTGTTAGGGCAAGGAGGGTTCGGGTATGTCCACAAGGGAGTGCTCGTAGGCGGCAAGGAAGTCGC GGTGAAGAGCTCGAAAGCCGGGAGCGGACAAGGGGAACGGGAGTTTCAGGCCGAGGTTGAGATCATTACTAGGGTCCACCACCGCCACCTTGTTACGCTT GTCGGGTATAGCATTACTAAGGATAAGAAGTTGCTTGTCTACGAATTTGTGCCCAATGGAACCCTCGAGTTCCACCTCCACGGAACGAACCGGCCAACCA TGGATTGGCCGACCCGTCTCAAAATTGCCATTGGATCGGCGAAAGGACTTGCCTACTTGCATGAAGACTGCAACCCACGCATTATCCATCGAGACATCAA AGCTGCAAATATCCTCGTTGACTTCAATTTCGACGCTAAGGTGGCCGATTTCGGGCTGGCCAAGCTGAATCAGGGCAACTTCACTCACATATCGACTCGT GTGATGGGCACTTTTGGATATATGGCTCCAGAGTACGCATCGAGCGGGAAGCTAACGGACAAATCCGACGTGTTCTCTTTCGGGGTCGTGTTGCTCGAGC TAATATCCGGCCGCCGTCCTCTCGATGATCATTCTACCATGGACTGCTTGGTGGATTGGGCAAGGCCTCTATGCACGAAAGCATTGGAAAGCGGGAAATG CGACGAACTGGCGGATCCAGGATTGAAACGGAAATATAACGTTCAGGAGATGAAACGAATGGTCGCTTGCGCTGCTAACGTTATCCGACATTCGTCGAAA AAACGACCCAAGATGAGCCAGATTGTTCGAGTACTCGAGAGCGACGCGCCATTGGAGCAGTTGAACGACGGAGGAGTCAAAGCAGGTTACAGTTCGTACT ACGGCCACACATCTGCGGATGATTACGATCAAAGATCGTACAGTGCAGACATGAAGAAGTTCAGGAAGGCGATAATGGATGACCTAAGCAGCGAGTATGG TGATACAAGACACTGA
AA sequence Show only first row Show all	>Lus10040467 pacid=23173967 polypeptide=Lus10040467 locus=Lus10040467.g ID=Lus10040467.BGIv1.0 annot-version=v1.0 MLNVTAPAPTTKSPSPPPPTNSPPPSKRSPPPPPAVKPKPPPAPKLQPPPLPPARPLTPIQPLPPPIPVLPPPALPASQRPHPRPLGPPPPHTKPSGGGG GGGGQSNNSNNVVSIGVGVAVGVTAVLFVGAVAYFCFCRKRKRNDDHELAYYASAPPPHKGQPGGYYVASPAHAMAGRYYASNQPPHHQSWQVNTASTPA PGGLWQQPPTLPTSQPATPSKGNNNSSTFSYEELQAATNGFAASNLLGQGGFGYVHKGVLVGGKEVAVKSSKAGSGQGEREFQAEVEIITRVHHRHLVTL VGYSITKDKKLLVYEFVPNGTLEFHLHGTNRPTMDWPTRLKIAIGSAKGLAYLHEDCNPRIIHRDIKAANILVDFNFDAKVADFGLAKLNQGNFTHISTR VMGTFGYMAPEYASSGKLTDKSDVFSFGVVLLELISGRRPLDDHSTMDCLVDWARPLCTKALESGKCDELADPGLKRKYNVQEMKRMVACAANVIRHSSK KRPKMSQIVRVLESDAPLEQLNDGGVKAGYSSYYGHTSADDYDQRSYSADMKKFRKAIMDDLSSEYGDTRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Lus10040467 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	4.0	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	5.7	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	6.9	1.0000
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	7.3	1.0000
					Lus10011636 [exp]	8.0	1.0000
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	8.9	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	9.8	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	10.6	1.0000
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10037040 [exp]	11.2	1.0000
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	11.3	1.0000

Compare expression of checked genes

Lus10040467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.